SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9225

Length: 1191 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9225

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zf-CW domain containing protein	-	-	2.0e-10	40%
FL-Next	sp=B3 domain-containing protein Os07g0679700; Oryza sativa subsp. japonica (Rice).	-	-	0.0	47%
Blast2go	b3 domain-containing protein os07g0679700-like	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6Z3U3

Fln msg: your sequence is shorter than subject: 347 - 949

Fln protein: TVKQSGREQDQWAQCDECGCWRRLPLDVKVPIQWTCADNSWDSKRASCSIPQEISSAELEELLRLNIDMKKQKAAQGLKGKDPSSGLDALANAAVLNENGTSPPLIAQTTKHPRHRPGCTCIVCSQPPSGMGPKHKPTCTCNVCLTVKRRFQTLMMRRKKRQSEQDAEKAKKRQTLVKEEVEVDSAPKGPSINQCLENGCSDGDVKTVHNKVPGNGVMLPMSPNLQGSYISSRTSKDECCVSKGQIDLNCHPDRDEELSGGGDRMSMLRLLQDANSPLDIYLQQQGFTVQQQGFTGLISSEHVSMPMVGFQNNPSEQRVDDKSSIPPKVHNAEHNKDDRFFLPNTS*

Protein Length: 348

Fln nts: CACAGTCAAGCAATCAGGCCGAGAGCAGGATCAGTGGGCTCAGTGTGATGAATGTGGCTGTTGGCGCAGACTGCCTTTAGATGTCAAGGTGCCTATACAATGGACCTGTGCCGATAATTCATGGGATTCTAAAAGGGCTTCTTGTTCAATACCTCAGGAAATAAGCTCTGCAGAATTAGAAGAACTTCTTCGCCTCAACATAGATATGAAGAAACAAAAAGCTGCACAGGGTCTAAAGGGAAAAGATCCTTCTTCTGGTCTAGACGCACTAGCCAATGCTGCAGTTCTTAATGAGAATGGTACTTCACCTCCTCTAATTGCTCAGACTACAAAACACCCTCGACACCGGCCTGGTTGCACATGTATTGTTTGTAGTCAGCCTCCTAGTGGAATGGGACCGAAACATAAACCCACTTGTACTTGCAATGTTTGTTTGACTGTTAAGCGCCGTTTTCAAACACTCATGATGCGCCGTAAGAAGCGTCAATCAGAACAAGATGCAGAAAAGGCAAAGAAAAGGCAAACTCTAGTGAAGGAAGAGGTAGAAGTGGACAGTGCACCAAAAGGACCATCAATCAACCAATGCTTGGAGAATGGTTGTAGTGATGGAGATGTAAAGACTGTTCATAATAAAGTGCCAGGTAATGGAGTCATGTTGCCCATGAGTCCGAATTTGCAGGGTTCTTACATAAGTAGTAGAACTAGCAAAGATGAATGCTGTGTCAGCAAAGGACAAATTGATTTGAATTGTCATCCAGACCGAGATGAGGAATTGTCAGGTGGAGGTGATCGTATGAGTATGCTGAGGCTACTCCAGGATGCCAATTCACCACTTGACATTTATCTCCAGCAGCAGGGTTTTACAGTCCAGCAGCAGGGTTTTACAGGGTTGATATCTTCTGAGCACGTAAGCATGCCCATGGTGGGATTCCAAAACAATCCAAGTGAACAAAGAGTGGATGATAAGAGCAGCATACCGCCAAAAGTTCACAATGCTGAACATAATAAGGATGATCGTTTCTTCCTACCAAATACATCATAA___ACTGACATACAATTAGTTTCATTTAAGGTTTTCAATCAGAACTTATAGGATGCATCTGGGCTCAGCAAGAAGCAGATGTAGTGACAATTCCTGGGAAACGTGGCTATCATTTATTTTAACGAAAACATCTCTGGAGGTTGAGTTGAATA

Fln Alignment:

Contig9225___TVKQSGREQDQWAQCDECGCWRRLPLDVKVPIQWTCADNSWDSKRASCSIPQEISSAELEELLRLNIDMXXXXXXXXXXXXDPSS---GLDALANAAVLNENGTS-PPLIAQTTKHPRHRPGCTCIVCSQPPSGMGPKHKPTCTCNVCLTVKRRFQTLMMRRKKRQSE-QDAEKAKKRQTLVKEEVEVDSAPKGPSINQCLENGCSDGDVKTVHNKVPGNGVMLPMSPNLQGSYISSRTSKDECCVSKGQIDLNCHPD--RDEELSGGGDRMSMLRLLQDANSPLDIYL
Q6Z3U3______________TIRSTG-EQDQWIQCDDCSKWRRLPLNVIVASKWTCADNTIDSKSCSCSAPEELTPKELHIVLQQYEDMRRRRNSFGFKQNIPEMDAVSLDAFATAAVYGDVGNQGSPSVATTTKHPRHRPGCTCIVCIQPPSGKGPKHNPACTCNVCMTVRRRFKTLMMRKKQRQSEREEAEASKKIAWMNRDEPEGSSLSRSPQ----TVDTTRDGDV----------------------------TMFDKVDINKGHIDLNFHPTAVRDEERHGGQPRVSMVSLLEVANRPLENYM

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
455		14		85	0.993533
456			14	85	0.993533
922	88			11	0.923564
924		11	88		0.923564
926		11		88	0.923564
1000		10	90		0.90298
1001	90		10		0.90298
1002	90			10	0.90298
1004	90		10		0.90298
1007	90	10			0.90298
1008		10		90	0.90298
1009	88			11	0.923564
1010	88			11	0.923564
1011	14		85		0.993533
1012		14	85		0.993533
1013	85	14			0.993533
1015	16			33	1.0
1016		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain