SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9223

Length: 1086 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9223

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin specific protease 12 n=2 Tax=Glycine max RepID=D3G9L7_SOYBN	-	-	8.0e-40	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	ubiquitin specific protease 12	-	-	4.27147e-40	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	4.27147e-40	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	4.27147e-40	77%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	4.27147e-40	77%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
324	80	20			0.995493
384	33	33			0.997753
657		33	66		0.997452
659		33	66		0.997452
660	33		66		0.997452
670	75	25			0.996473
671	75		25		0.996473
672	75			25	0.996473
673	75	25			0.996473
675	75			25	0.996473
678		25		75	0.996473
680	75			25	0.996473
681			75	25	0.996473
682	75		25		0.996473
686	75		25		0.996473
687	75			25	0.996473
688		25	75		0.996473
691	75			25	0.996473
705		25		75	0.996473
740			25	75	0.996473
744		25		75	0.996473
819	75	25			0.996473
950			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain