SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9137

Length: 1130 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9137

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative lycopene beta cyclase n=38 Tax=Cupressaceae RepID=Q403Q1_TAXDI	-	-	88%
FL-Next	tr=Putative lycopene beta cyclase; Taxodium distichum var. imbricarium.	-	-	88%
Blast2go	lycopene beta cyclase	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	0.0	94%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	Lycopene cyclase-type, FAD-binding	IPR008671	-	-
Sma3	Lycopene cyclase, beta/epsilon	IPR010108	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q403Q8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 217 - 525

Fln protein: ICNALFTY*NFLEETSLVARPGVSVEEIQKRMVARLKHLGIQVKSIEEDEICVIPMGGPLPVIPQRILGIGGTAGMVHPSTGYMVARTLAAAPVLASSIVKCLGSGKRITGDELSAEVWKDLWPMDRRRQREFFCFGMDILLKLDLEGTRRFFNAFFDLEPYYWHGFLSSRLFLPDLVVFGLALFAHASNTSRIEIMAKGTLPLLKMINNLVRERE*

Protein Length: 218

Fln nts: ATATGCAATGCCCTTTTCACCTACTAGAATTTCTTGGAGGAGACATCTCTTGTTGCAAGGCCTGGTGTTTCTGTGGAGGAGATCCAGAAAAGGATGGTGGCTAGATTGAAGCATCTGGGGATTCAGGTGAAAAGCATAGAAGAGGATGAAATATGTGTTATCCCCATGGGAGGTCCATTGCCTGTGATTCCTCAAAGAATATTGGGAATAGGAGGAACTGCAGGAATGGTGCATCCATCAACTGGATACATGGTGGCGAGAACTTTGGCTGCAGCTCCGGTTTTAGCCAGCTCAATTGTTAAATGTCTTGGGTCTGGAAAAAGAATTACTGGAGACGAGCTATCGGCCGAGGTTTGGAAGGATTTGTGGCCCATGGATAGGAGACGGCAGAGAGAATTCTTCTGCTTTGGAATGGATATTCTGCTGAAGTTGGATTTGGAAGGGACGAGGAGATTCTTCAATGCCTTCTTTGACTTGGAACCCTATTATTGGCATGGTTTTCTGTCCTCGAGGTTGTTTCTCCCTGACCTTGTTGTCTTCGGGCTGGCTTTATTTGCCCATGCCTCCAACACATCCAGGATAGAGATCATGGCAAAGGGTACTTTACCTCTATTAAAGATGATTAATAATTTGGTGAGGGAGAGGGAATAG___GATGATTCGGCTCGATCAGCAAAGGGCTCTAGTTTTATCTCGTCAAAAATGCCAACTACTTCGCAGCATAAGCCGAAACAGTAGGCAGATTAGCGAGTTTCTTTATGTTAGTTTACACCGGAAATCTGGTACGTAAAGTATAATATAACGATACAAATAGTGGATGGAGCAACCGATATGGTGGCTTTAGTTGCTCCTGCAGATTGTAATCTGAACAATAATTTTGTGTTGAAGTAGTCACTGCTCTCCATTTTTTAACTGCATTTAATCTTCAAGAACAAGGTTCCATTGTTTAATTTAATGTTCAAGAACAGGGTCTTCCTTTGCTTGTAATTATTGGAGTGCACTTATGAGATCCATATTACAAGATGCTGTAATTGCATTTCTGTTTTGTAGGAAGGAGTGGAATATGAGCCTATTTTGCTGTTTACGGGTGAGTGAAAATACAAATTAAAGTAGAGATATCCTACCCCTAACTT

Fln Alignment:

Contig9137___FLEETSLVARPGVSVEEIQKRMVARLKHLGIQVKSIEEDEICVIPMGGPLPVIPQRILGIGGTAGMVHPSTGYMVARTLAAAPVLASSIVKCLGSGKRITGDELSAEVWKDLWPMDRRRQREFFCFGMDILLKLDLEGTRRFFNAFFDLEPYYWHGFLSSRLFLPDLVVFGLALFAHASNTSRIEIMAKGTLPLLKMINNLVRERE
Q403Q8______________FLEETSLVARPGVSMEEIQKRMVARLRHLGIKVRSIEEDEKCYIPMGGPLPVIPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVLASSIVKCLNSGNRLHGEELSTEVWKDLWPMDRRRQREFFCFGMDILLKLDLKGTRRFFNAFFDLEPYHWQGFLSSRLFLPDLIFFGLALFAHASNTSRLEIMAKGTLPLMKMINNLVADRE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
567	16	83			0.999991
808	25		75		0.996473
814	57	14			1.0
817		14	85		0.993533
826	85	14			0.993533
827	85			14	0.993533
828		85		14	0.993533
829		85	14		0.993533
831	85	14			0.993533
833	85		14		0.993533
835		14	85		0.993533
836	14		85		0.993533
837		14		85	0.993533
838			85	14	0.993533
839		14	85		0.993533
840	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain