SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9112

Length: 1309 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9112

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like	-	-	7.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	80%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 214 aas, putative chimeric sequence, your sequence is shorter than subject: 144 - 378

Fln protein: CVDPNSKRWPKPEVLTLIKLRSGMEQKFHEPGPKSPLWEEISEAMAALGYSRSAKRCKEKWENINKYFRKAKESNKKRPENAKTCPYFHQLDALYKKRNLGNRQNKIMEQDSMVNGNDNKVQDQKPGEHEQPSGSNRENHSGP*

Protein Length: 145

Fln nts: AATGTGTTGATCCCAACAGTAAGAGATGGCCTAAGCCTGAAGTACTTACGTTGATTAAACTGAGAAGTGGGATGGAGCAGAAATTTCATGAGCCAGGACCCAAGAGTCCATTGTGGGAAGAAATCTCAGAAGCCATGGCTGCCCTGGGATACAGTAGAAGTGCCAAGAGATGTAAGGAGAAGTGGGAAAACATCAACAAGTATTTCAGGAAGGCCAAAGAGAGTAACAAGAAACGTCCTGAGAATGCCAAGACCTGCCCTTACTTTCACCAGTTGGATGCTTTGTACAAGAAGAGAAATCTGGGCAACAGGCAAAACAAAATCATGGAGCAGGATTCAATGGTCAATGGCAATGATAACAAGGTGCAGGATCAGAAGCCTGGAGAGCATGAACAGCCCAGTGGAAGCAACAGAGAAAATCACTCAGGACCATAA___TGACCATCATTCCCACCACAACCAACAAGGTGATCATGGAGCAGATATCTTGACAGTCATGCCCACTGGTCATGGAGAACCCCAGGCATACAACCATGAGAGAACAAATCCAAATGCAAATTCTTGTTCTTCAACAAGGGATGCTTCAAACTTCATGGCTATGGTTCACAAGTTGACATCTGATCATCCTCCAGAATTTAACATGTCTACATCCTCCAATACAGAATGAGAACGTACAAACAGGCCTGCAAATTGTTTGAGTGTAAGGATTACAAACAAAATGAAAAAAATAGCCACGGGGTTTAACGTGTACCATATACTGTATCAATATTCAGTGTTCATGCTGGTGGGGATTGAGATTTTGATTTCATGAACAGGTTGGTTTTCATGGAAGCTCAAATAATGATCCATTGAATTGTTAATGGTCAATCAAAAAGTGTTGGCATTGACAGTTTGGGTTTTCATTGGAGTTAGGGTTTCCATTGCTGGTTGAATTTCACAAGAACCCTATTCATCCATTTGGCCACATATGGGCTGGACCGATTTTCTCTACTTGGATTATTACATAGTTACTATTATTATTATTTGTTGAATAAGGATTTCTGCAAGTCATGTAGTGAACCAATACGTGTTTGGCACTGTTGAACATGTTTATATATATTATGTAATATTGAAGGGGATATTAGTCCAGGAGACTACAGGGAGCCTTTATCATTTTCAGTCCAGCTGTGCTGTGCTACTACAGTAGTTGCCTTATTTGGCAACAGCAAATTCTTTAAAGAACCTTTCATTTATTTTTATTTATGGACACTCTGACATCAGCCAAATGTGCTCGTTTGTACTTTAATTTTAATTGTTTTTTTGGTCCAAAAAAA

Fln Alignment:

Contig9112___SKRWPKPEVLTLIKLRSGMEQKFHEPGPKSPLWEEISEAMAALGYSRSAKRCKEKWENINKYFRKAKESNKKRPENAKTCPYFHQLDAL
A9NRE1______________SKNWTRAETLKLIRLRAEMEPRFARSGRKSELWEEIAESLRRESVARDAQRCRDKWEKLTASYKEVRDGQRNRQD----FPFFDELDPL

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
360	50	50			1.0
402		44	55		1.0
404	55			44	1.0
405	55	44			1.0
407		55		44	1.0
408	55		44		1.0
411	55	44			1.0
412			55	44	1.0
413	55			44	1.0
415	55		44		1.0
416	55	44			1.0
417	55			44	1.0
418	55		44		1.0
424	11	88			0.923564
441		12		87	0.992554
728		60		40	1.0
732			60	40	1.0
733		40	60		1.0
734	40		60		1.0
758	83	16			0.994512
759			16	83	0.994512
760		83		16	0.994512
761	83		16		0.994512
763		16		83	0.994512
764	83	16			0.994512
767		83	16		0.994512
768	83		16		0.994512
769		16	83		0.994512
776		16		83	0.994512
777			83	16	0.994512
779	16			83	0.994512
791	85	14			0.993533
795		14		85	0.993533
796			14	85	0.993533
800		14		85	0.993533
803		85	14		0.993533
804	85		14		0.993533
807	85			14	0.993533
811		14	85		0.993533
812			85	14	0.993533
813		14		85	0.993533
814	14			85	0.993533
854			15	84	0.999986
856	84	15			0.999986
916	70		30		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1008	1020	TAT TAT TAT TAT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain