SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9102

Length: 741 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9102

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tolB-related protein [Arabidopsis thaliana] gb\|AAD22649.1\|AC007138_13 predicted protein of unknown function [Arabidopsis thaliana] emb\|CAB80680.1\| predicted protein of unknown function [Arabidopsis thaliana] gb\|AAP04154.1\| unknown protein [Arabidopsis tha	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	protein tolb	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	70%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9B, dipeptidylpeptidase IV N-terminal	IPR002469	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	WD40-like Beta Propeller	IPR011659	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
135	60	40			1.0
180		16	83		0.994512
190	83			16	0.994512
191	83			16	0.994512
199		16	83		0.994512
200		14	85		0.993533
207		85		14	0.993533
208	85		14		0.993533
210	85	14			0.993533
211		16	83		0.994512
212	83			16	0.994512
213	83			16	0.994512
214	66		33		1.0
216	66	33			1.0
217	83			16	0.994512
219		83		16	0.994512
221	80	20			0.995493
222		80		20	0.995493
448		16		83	0.999991
466			90	10	0.90298
469		10	90		0.90298
510	20			80	0.995493
547	25			75	0.996473
589	75			25	0.996473
598		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain