SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9060

Length: 491 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene9060
AAACAGTGTACGTTTTGTGTGGCAGTATGGCTTTTCAATCCATTCACATTCACTATTGCTACCAGGGGAAATTGTGAACCTCTTGTGTGTGCCATGATTTTGTGGATTCTGATATGTCTAATGAGAGGTCATATTGTGGAGGCAGCAATATGGTATGGACTAGTTGTCCATTTCAGAATCTACCCTATAATATATGTTCTCCCTATTCTCATTGTTCTTGATGAAAATTTTTTAACCTCAAGTCAGAGTCTTCGTCTCAGTAGTTGGAACACTAAACAACCAAGGTTATCAGATTCTGAATCAATATTCTCATGTATCAAAGCCATATTTAGGGTAAACTTAGGGCTCGTGTTAAAGGCACTCTTGAACAAACATAGAATACTATTTGGAATGTTATCTGGAGGGGTGTTCTTTTTCTTGACTGGTATTTTCTATTATTTATATGGAGAAAATTCTTGAATGAAGCTCTGCTCTACCACCTCACACGTACT

Ace file of the UniGene sp_v2.0_unigene9060 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GPI mannosyltransferase 1 n=1 Tax=Arabidopsis thaliana RepID=F4K8F7_ARATH	-	-	7.0e-37	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	gpi mannosyltransferase 1	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	GPI anchor biosynthetic process	GO:0006506	Biological Process	68%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	68%
Blast2go	cell division	GO:0051301	Biological Process	68%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	68%
Blast2go	embryo development	GO:0009790	Biological Process	68%
Blast2go	alpha-1,4-mannosyltransferase activity	GO:0051751	Molecular Function	68%
Blast2go	integral to membrane	GO:0016021	Cellular Component	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mannosyltransferase, DXD	IPR007704	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMK7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 169 aas, your sequence is shorter than subject: 122 - 293

Fln protein: MILWILICLMRGHIVEAAIWYGLVVHFRIYPIIYVLPILIVLDENFLTSSQSLRLSSWNTKQPRLSDSESIFSCIKAIFRVNLGLVLKALLNKHRILFGMLSGGVFFFLTGIFYYLYGENS*

Protein Length: 123

Fln nts: AAACAGTGTACGTTTTGTGTGGCAGTATGGCTTTTCAATCCATTCACATTCACTATTGCTACCAGGGGAAATTGTGAACCTCTTGTGTGTGCC_-_ATGATTTTGTGGATTCTGATATGTCTAATGAGAGGTCATATTGTGGAGGCAGCAATATGGTATGGACTAGTTGTCCATTTCAGAATCTACCCTATAATATATGTTCTCCCTATTCTCATTGTTCTTGATGAAAATTTTTTAACCTCAAGTCAGAGTCTTCGTCTCAGTAGTTGGAACACTAAACAACCAAGGTTATCAGATTCTGAATCAATATTCTCATGTATCAAAGCCATATTTAGGGTAAACTTAGGGCTCGTGTTAAAGGCACTCTTGAACAAACATAGAATACTATTTGGAATGTTATCTGGAGGGGTGTTCTTTTTCTTGACTGGTATTTTCTATTATTTATATGGAGAAAATTCTTGAATGAAGCTCTGCTCTACCACCTCACACGTACT

Fln Alignment:

Contig9060___MRGHIVEAAIWYGLVVHFRXXXXXXXXXXXXXLDENFLTSSQSLRLSSWNTKQPRLSDSESIFSCIKAIFRVNLGLVLKALLNKHRILFGMLSGGVFFFLTGIFYYLYGE
B8LMK7______________MRGHVVEAAIWYGLVVHFRIYPIIYVLPILIVLDEQYLTSSQSLRLSYWNTKQPRLSDSESIFLCIKAIFRVNLGLVLKKLLNKHRILFGMLSGGVFFLLTGIFYYLYGE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
265	33			66	1.0
321	87	12			0.992554
324			87	12	0.992554
419			33	33	0.997753
420	33			66	0.997452
428			33	66	0.997452
429			33	66	0.997452
432	33	66			0.997452
434		66	33		0.997452
435	33			66	0.997452
436		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain