SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9057

Length: 520 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene9057
CATCTCCCATCCAGATGCAGGAAAACCACGCTTACAGAGAAGTTACTGCTTTATGGGGGAGCCATTCATGAAGCAGGTGCTGTAAAGGCTCGGAGAGCAGCGCGCCATGCTACATCAGATTGGATGGAATTAGAGAAGCAGCGGGGTATCTCAATCACGTCAACTGCTATGGTGTTTGAGACGAAAGGTTTCCAAATAACACTTCTTGACACTCCTGGGCATCAGGATTTTGGAGAGGATACATTTAGGACGCTAGCAGCAGCAGATAATGCAGTGATGTTAGTGGATGCAGGAAAAGGTCTAGAACCACAAACTAAAAAGCTTTTTGAGGTATGCAGAATGAGGAAGCTTCCTGTGTTTACTTTTATGAACAAAATGGACCGTCCAGCACTAGAACCTCTGGAGTTACTTGATCAAATTGAGCAGGAGTTTGGGCTTGCTACCTATCCAGTTAGCTGGCCTATAGGGTCTGGTGATAGGTTCATTGGATTGTATCATATACCTAGCAAGAATGTTCATT

Ace file of the UniGene sp_v2.0_unigene9057 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptide chain release factor 3 [Cyanothece sp. CCY0110] gb\|EAZ90618.1\| peptide chain release factor 3 [Cyanothece sp. CCY0110]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	peptide chain release factor 3	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycine--tRNA ligase.	EC:6.1.1.14	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	glycyl-tRNA aminoacylation	GO:0006426	Biological Process	87%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	87%
Blast2go	regulation of translational termination	GO:0006449	Biological Process	87%
Blast2go	translation release factor activity, codon specific	GO:0016149	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	GTPase activity	GO:0003924	Molecular Function	87%
Blast2go	GTP binding	GO:0005525	Molecular Function	87%
Blast2go	glycine-tRNA ligase activity	GO:0004820	Molecular Function	87%
Blast2go	cytoplasm	GO:0005737	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Peptide chain release factor 3	IPR004548	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKZ4

Fln msg: Distance to subject end: 513 aas, your sequence is shorter than subject: 173 - 785

Fln protein: HLPSRCRKTTLTEKLLLYGGAIHEAGAVKARRAARHATSDWMELEKQRGISITSTAMVFETKGFQITLLDTPGHQDFGEDTFRTLAAADNAVMLVDAGKGLEPQTKKLFEVCRMRKLPVFTFMNKMDRPALEPLELLDQIEQEFGLATYPVSWPIGSGDRFIGLYHIPSKNVH

Protein Length: 174

Fln nts: CATCTCCCATCCAGATGCAGGAAAACCACGCTTACAGAGAAGTTACTGCTTTATGGGGGAGCCATTCATGAAGCAGGTGCTGTAAAGGCTCGGAGAGCAGCGCGCCATGCTACATCAGATTGGATGGAATTAGAGAAGCAGCGGGGTATCTCAATCACGTCAACTGCTATGGTGTTTGAGACGAAAGGTTTCCAAATAACACTTCTTGACACTCCTGGGCATCAGGATTTTGGAGAGGATACATTTAGGACGCTAGCAGCAGCAGATAATGCAGTGATGTTAGTGGATGCAGGAAAAGGTCTAGAACCACAAACTAAAAAGCTTTTTGAGGTATGCAGAATGAGGAAGCTTCCTGTGTTTACTTTTATGAACAAAATGGACCGTCCAGCACTAGAACCTCTGGAGTTACTTGATCAAATTGAGCAGGAGTTTGGGCTTGCTACCTATCCAGTTAGCTGGCCTATAGGGTCTGGTGATAGGTTCATTGGATTGTATCATATACCTAGCAAGAATGTTCATT

Fln Alignment:

Contig9057___KTTLTEKLLLYGGAIHEAGAVKARRAARHATSDWMELEKQRGISITSTAMVFETKGFQITLLDTPGHQDFGEDTFRTLAAADNAVMLVDAGKGLEPQTKKLFEVCRMRKLPVFTFMNKMDRPALEPLELLDQIEQEFGLATYPVSWPIGSGDRFIGL
B8LKZ4______________KTTTTERILFYTGKNYKIGEVHDGTA----TMDWMEQEQERGITITSAATTCAWNNHRINIIDTPGHVDFTLEVERALRVLDGSICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTRDMIITNLGAKPLVLQIPIGAEDRFQGL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
120	80		20		0.995493
286	16	83			0.994512
287	16			83	0.994512
288		83		16	0.994512
289		83	16		0.994512
290	83			16	0.994512
339	16		83		0.994512
340		16		83	0.994512
341	16	83			0.994512
343		83		16	0.994512
393			14	85	0.993533
394		85		14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain