SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9050

Length: 924 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9050

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO	-	-	4.0e-32	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	ring zinc finger	-	-	0.0	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	0.0	57%
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P249

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, W2: There is no M at the beginning,

Fln protein: RRDLGCHSIWGDGPKYPQPIQGDAEDQPTYAGINEDYLEQKNDINGKIMLAGILVFMFVICLAILLHVYARWFWRRSGRFPSRNRRRSSSIRSRFNFIEEEPAWLRNVGLQSAVLETLPIFVYKSEDFTDGLECAVCLCEFEENEKARLLPNCRHNFHVECIDMWFRSHSTCPLCRTRAEPLHPILESLRTEQVWVTIPEPIPSGTADNRNSEEGPTASSGEDDNRQNPTNIFSWDKQKQINAEMDEGTSGGRKALMVPQIGIEIPKRTHSFSFRREAHQLCSPNGSQSFSRSSVNLLRSLSRMLSRD

Protein Length: 309

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGGGGCGATGGTCCTAAATACCCACAGCCAATTCAAGGTGATGCCGAAGATCAGCCCACATATGCAGGCATCAATGAGGATTACCTGGAGCAGAAAAATGACATCAATGGTAAAATCATGCTAGCTGGCATACTAGTTTTTATGTTTGTTATTTGTTTAGCCATTTTGCTGCACGTTTATGCCAGATGGTTTTGGAGGCGGTCTGGTCGATTCCCCAGCCGGAATCGACGGAGATCATCTTCTATCCGTAGTCGGTTTAATTTTATAGAAGAAGAACCGGCGTGGCTGCGGAACGTGGGGTTGCAATCTGCCGTATTAGAGACACTGCCCATCTTTGTGTATAAATCAGAGGATTTCACTGATGGGCTGGAGTGCGCAGTGTGTCTGTGCGAATTCGAGGAGAATGAGAAAGCTCGGCTTCTGCCCAATTGCAGGCACAATTTTCATGTCGAGTGTATTGACATGTGGTTTCGTTCGCATTCCACTTGCCCCCTTTGCAGAACCCGCGCCGAACCCCTACACCCAATTCTGGAATCCCTTAGAACAGAGCAAGTTTGGGTTACAATCCCAGAGCCAATTCCTTCAGGAACCGCTGATAATCGCAATTCGGAGGAAGGGCCGACTGCAAGTTCTGGAGAAGATGATAATCGGCAGAACCCCACAAATATATTCTCTTGGGATAAGCAGAAGCAAATCAATGCAGAGATGGATGAGGGAACCTCGGGTGGAAGAAAAGCATTAATGGTGCCTCAGATTGGCATTGAAATACCCAAGCGAACCCATAGCTTTTCGTTTCGTCGCGAAGCCCATCAGCTTTGCTCGCCAAATGGTTCTCAATCGTTTTCCAGATCTTCTGTTAATCTCCTTCGCTCGCTTTCGAGGATGTTGAGCAGAGAC

Fln Alignment:

Contig9050___EQKNDINGKIMLAGILVFMFVICLAILLHVYARWFWXXXXXXXXXXXXXXXXXXXXFNFIEEEPAWLRNVGLQSAVLETLPIFVYKSEDFTDGLECAVCLCEFEENEKARLLPNCRHNFHVECIDMWFRSHSTCPLCRTRAEPLHPILESLRTEQVWVTIPEPIPSGTADNRNSEEGPTASSGEDDNRQNPTNIFSWDKQKQINAEMDEGTSGGRKALMVPQIGIEIPKRTHSFSFRREAHQLCSPNGSQ
A9P249______________EPKYLINGKIMILAVICLLLVAALVFLLHVYARWIWRESSRISRRTRRRSASTRRRFSFTGREPARLLNVGLDSKILETLPMFLYKSQNFTDGLDCAVCLCEFEDNEKARLLPNCGHSFHVECIDMWFRSHSTCPVCRTGAQPEQPVLESARVEQVSVTIPGPITSGFHDNPNLEQDQTAGCGEDYNLQNATNIFPWGRQKQMKTEMDEGTSGGGRALM-PQIAIDIPKRPDGFS-SGEGHQFQSPNGSQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
690		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain