SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8988

Length: 615 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8988 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	sirtuin 1 [Arabidopsis thaliana] gb\|AAG44850.1\|AF283757_1 sir2-like protein [Arabidopsis thaliana] dbj\|BAB09243.1\| transcription regulator Sir2-like protein [Arabidopsis thaliana] gb\|AED96677.1\| sirtuin 1 [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	sirtuin 1	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on carbon-nitrogen bonds, other than peptide bonds, In linear amides.	EC:3.5.1.-	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Lysine biosynthesis	00300	80%
Blast2go	Fluorobenzoate degradation	00364	80%
Blast2go	Glutathione metabolism	00480	80%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	80%
Blast2go	Lipopolysaccharide biosynthesis	00540	80%
Blast2go	Sphingolipid metabolism	00600	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	protein deacetylation	GO:0006476	Biological Process	80%
Blast2go	chromatin silencing	GO:0006342	Biological Process	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	GO:0016811	Molecular Function	80%
Blast2go	NAD+ binding	GO:0070403	Molecular Function	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	chromatin silencing complex	GO:0005677	Cellular Component	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent deacetylase, sirtuin family	IPR003000	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
93	25		75		0.996473
114		14		85	0.993533
222	20		80		0.995493
226			80	20	0.995493
306	25	75			0.996473
308		75		25	0.996473
505	16			16	0.988813
566	25	75			0.996473
586	75	25			0.996473
590		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain