SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8974

Length: 783 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8974

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative NBS-LRR protein G8029 (Fragment) n=2 Tax=Pinus monticola RepID=Q6WE85_PINMO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	nbs-lrr protein g8029	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	71%
Blast2go	cellular process	GO:0009987	Biological Process	71%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
240	80			20	0.999996
257	10		90		0.90298
265		10	90		0.90298
282		80		20	0.999996
288		80	20		0.999996
291		80		20	0.999996
298	80		20		0.999996
303	20	80			0.999996
310	10		90		0.90298
320		20		80	0.999996
321		20	80		0.999996
334			90	10	0.90298
364		90		10	0.90298
387			87	12	0.992554
462			66	33	0.997452
494			75	25	0.996473
503		75	25		0.996473
512		80		20	0.995493
538		83		16	0.994512
540	83			16	0.994512
541		83		16	0.994512
542	66		16	16	0.988813
544		16	83		0.994512
551	66		33		1.0
552	83		16		0.994512
553	83		16		0.994512
580	75		25		0.996473
589		25		75	0.996473
607		25	75		0.996473
613		25		75	0.996473
618	25	75			0.996473
628	66		33		0.997452
668		66		33	0.997452
684	33			66	0.997452
690	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain