SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8970

Length: 1243 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8970 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F3F20.17 protein n=3 Tax=Arabidopsis thaliana RepID=Q9SYL3_ARATH	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	15 kda seleno	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	selenium binding	GO:0008430	Molecular Function	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sep15/SelM redox	IPR014912	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ18

Fln msg:

Fln protein: MARAWYSCFILLLVIQVARSEQPSTKTCEDLGFTGLALCSDCQALAEYVKDEELVLDCKKCCVQESEDSISKVTYAGAILEVCMRKLVFYPDVLSFIEEEQDDFPSVHVQYVYSSPPKLVMLDEDGNHKETIRIDNWKREHICQFLKEKVKAKAVTS*

Protein Length: 159

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTACGGCGTGACACTGGCTTCACCCCTCCTCCTTTTTCCTGCCTCGAGAAGGGTGCAGTCACTCTGCGCTCACACCGATGTCTACCTCTATTTTTATTTAAATGAAAACGCGGACTGGTGATTGACTTGAGCACTGTGTATTCTTATAGGAAGCCAATTTCCGAAATCGGGTGATGCAAAACTACGAATCACAGAAGATTTA_-_ATGGCGAGGGCATGGTATTCCTGTTTCATATTGCTTTTAGTCATCCAGGTGGCAAGGTCAGAGCAGCCGAGTACCAAAACATGCGAAGATCTCGGCTTCACAGGTCTCGCTCTCTGTTCAGACTGTCAGGCACTGGCCGAATACGTTAAGGATGAAGAGCTAGTATTGGACTGCAAAAAATGTTGTGTGCAAGAATCAGAAGATTCAATCAGCAAGGTTACTTATGCTGGTGCAATTTTGGAAGTATGCATGAGAAAGCTGGTGTTTTATCCAGATGTCCTCTCATTTATTGAGGAAGAACAAGATGATTTTCCTTCTGTCCATGTTCAATATGTTTATTCATCGCCCCCAAAACTTGTGATGTTGGATGAAGATGGAAATCACAAGGAAACTATCAGGATTGATAACTGGAAGAGAGAACATATATGTCAGTTCTTGAAGGAAAAGGTCAAGGCAAAAGCAGTAACGAGCTAA___TGGTGTTGGGTGATCATCATAAAACATAGGATCAAATTGCTTTTAGTCTTCAAGGTATCTAGTAGGCCCATTTCCTTCCTAGTCATATGGATGCCTTTTGTATAATGAATTCGATTTAAATTGAGTCTCTATTTCCAACTGAAGGATAGTCATGGACTATCAGTTGCCTCATATCTGATGTGGCCATGACACTGTATTAGAGCCATAGAATGTTCCCTTTCAGAAAGGAACCCCAATATGTTCCCTCTTTCCTTAACAAGTATGCAATTTATATGCATGTGGAAAATTTTTCATATGGATTCCTTCAGAGACATTATGACACTAGAACTTGGTTATTTTGAACTTGAAATGTGGCATTTTAGACTTGTGATGTTTGACTGCAGCATGCTCTTCCTAGACTGTTCAGTGTTGATGGATTGATAGTTCCACTTTTATATTTTCTCTTGAACACATTCAACGCATGTTGCAATACTCTTCAAAATTTTGGTGGTTGAGGAGAGTAAGAAAGACAGCCTTTCCACAGATTTCAATTCCTCTAGTT

Fln Alignment:

Contig8970___MARAWYSCFILLLVIQVARSEQPSTKTCEDLGFTGLALCSDCQALAEYVKDEELVLDCKKCCVQESEDSISKVTYAGAILEVCMRKLVFYPDVLSFIEEEQDDFPSVHVQYVYSSPPKLVMLDEDGNHKETIRIDNWKREHICQFLKEKVKAKAVTS
A9NZ18______________MAKGWYSCFILFLVVQVARSEQTSTKTCEDLGFTGLSLCSDCQALAEYVKDEELVSDCKKCCVQESEDSIGKVTYAGAILEVCMRKLVFYPDLLSFIEEEQDDFPSVHVQYIYGSPPKLVMLDEDGNHKETIRIDNWKREHIRQFLKEKVKGKAVTS

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
212	22		77		0.999999
256	16			83	0.999991
478			14	85	0.999981
519			10	90	0.90298
521			10	90	0.90298
523	10			90	0.90298
526	10			90	0.90298
528	90		10		0.90298
533	11	88			0.923564
535	88		11		0.923564
547		10		90	0.90298
584		90	10		0.90298
585	10			90	0.90298
587	80			20	0.999996
588		90	10		0.90298
590		10		90	0.90298
592			10	90	0.90298
593	90	10			0.90298
594		10		90	0.90298
595	11		88		0.923564
596	11			88	0.923564
597			11	88	0.923564
598		88	11		0.923564
601	11			88	0.923564
603			11	88	0.923564
989		5	94		0.998578
1053			5	94	0.998744
1069	6	93			0.99903
1090	79	10	6		1.0
1091	86	6		3	0.995852
1092	3	7	82	3	0.993672
1093		3		88	0.998862
1094		75	12	8	1.0
1095	82	13	4		1.0
1096	78	13	4	4	1.0
1097	4	13	13	68	1.0
1099	80	4	4		0.999537
1100	14	80		4	1.0
1101	10	80		10	0.99967
1116		16		83	0.999991
1143		20		80	0.999996
1145	20		80		0.999996
1146	20		80		0.999996
1147			20	80	0.999996
1150		20	80		0.999996
1155	20	80			0.999996
1156	80	20			0.999996
1164	12			87	0.992554
1167	87	12			0.992554
1168	12	87			0.992554
1169	12	87			0.992554
1170		87	12		0.992554
1171			14	85	0.993533
1173		42		57	1.0
1174	14			85	0.993533
1178		14	85		0.993533
1198	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain