SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8942

Length: 1173 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8942

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TED3; TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding; K06664 peroxin-2	-	-	63%
FL-Next	sp=Peroxisome biogenesis protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	79%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	79%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	cytosol	GO:0005829	Cellular Component	79%
Blast2go	peroxisomal membrane	GO:0005778	Cellular Component	79%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pex, N-terminal	IPR006845	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9CA86

Fln msg:

Fln protein: MEDARASPSSSLQDTNLPPRDAWQQAYLRVAPQWQQLKSSSQTPFLPISISRVNQFDAGRLDIEMSAMLKDQLVKVFSVMKPGWLSRYEPELDAFLQFLIWRFSIWVDKPTPGNALMNLRYRNEDPTKTIRKEQVRTGLEGPGLTKSQKLWYCLAIVGGHYGWTRLQSFSAFRSWGNSEQTSWSRRAWVLLQRAEGFYKATSFLNLLLFLYTGRYRSIVERVLKARLVYERPNMNRAVSFEYMNRQLVWNEFSELLLLILPLLNTTSVKKILFFPFSKDQSPGSSAEDDSCPVCGVNPITISFVAIPCEHKYCYYCLRTRCSAGSSFHCLRCNAQVMAMKRNSPQVNSIGDDS*

Protein Length: 355

Fln nts: ATGGGGATGTATACGGGTATTATAAAACCCTGAAAAATTTCAAAACCCGTGGGAGATACAGCGGGCCATCAGCA_-_ATGGAGGATGCTCGGGCATCGCCATCTTCATCATTGCAGGACACCAATCTCCCTCCGCGCGATGCGTGGCAGCAGGCTTACCTCAGGGTTGCACCACAATGGCAGCAGCTGAAGAGTTCTTCTCAGACGCCCTTTTTACCAATTTCTATATCAAGAGTTAACCAATTTGATGCTGGGAGGCTGGATATAGAAATGTCAGCTATGTTGAAGGATCAGCTTGTTAAGGTCTTCTCAGTAATGAAGCCAGGGTGGTTATCTCGTTATGAACCTGAGCTAGATGCTTTTCTTCAGTTCCTTATTTGGAGGTTCTCGATTTGGGTGGATAAGCCTACTCCAGGGAATGCTCTTATGAATCTGAGGTACAGGAACGAGGACCCTACTAAAACGATCAGGAAAGAGCAAGTCAGGACAGGGTTGGAGGGGCCTGGTCTTACAAAGTCTCAGAAACTATGGTATTGCCTTGCCATAGTTGGAGGTCATTATGGTTGGACACGGCTGCAATCATTTTCTGCTTTTCGAAGCTGGGGCAATAGTGAACAGACATCATGGTCTCGGCGAGCATGGGTTCTACTCCAACGAGCAGAGGGTTTCTATAAAGCTACGTCATTTTTGAACCTCCTGCTATTCCTTTATACAGGAAGGTACAGGAGCATTGTTGAAAGGGTTTTAAAAGCTAGGCTTGTTTATGAAAGACCAAATATGAATCGTGCTGTCAGCTTTGAATACATGAACCGTCAGCTAGTTTGGAATGAGTTTTCGGAGTTACTATTACTAATATTGCCGCTGCTGAACACGACATCAGTAAAGAAAATTCTGTTCTTTCCTTTTTCAAAAGATCAATCACCTGGAAGCTCTGCTGAAGATGATTCCTGTCCAGTTTGTGGGGTGAACCCTATAACAATTTCATTCGTAGCTATTCCTTGTGAGCATAAATATTGTTACTATTGCCTCCGTACTAGGTGTTCTGCAGGCTCATCATTCCACTGTCTAAGATGCAATGCCCAGGTTATGGCGATGAAAAGAAACAGTCCACAAGTTAATAGCATAGGTGATGATTCATGA___AATTCAAGTACATAAAAATGCACGTTAACCTTTCTTA

Fln Alignment:

Contig8942___PPRDAWQQAYLRVAPQWQQLKSSSQTPFLPISISRVNQFDAGRLDIEMSAMLKDQLVKVFSVMKPGWLSRYEPELDAFLQFLIWRFSIWVDKPTPGNALMNLRYRNEDPTKTIRKEQVRTGLEGPGLTKSQKLWYCLAIVGGHYGWTRLQSFSAFRSWGNSEQTSWSRRAWVLLQRAEGFYKATSFLNLLLFLYTGRYRSIVERVLKARLVYERPNMNRAVSFEYMNRQLVWNEFSEXXXXXXXXXNTTSVKKILFFPFSKDQSPGSSAEDDSCPVCGVNPITISFVAIPCEHKYCYYCLRTRCSAGSSFHCLRCNAQVMAMKR
Q9CA86______________PADDAWIRSYQRLLPESQSLLASRRS-VIPVAISRVNQFDAARLDVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQSFSAFRRWGDSEQRPLARRLWTLVQRIEGIYKAASFLNLLSFLYTGRYRNLIEKALKARLVYRSPHMNRSVSFEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNIL-SPFAKDKSSSTKEDTVTCPICQVDP-AIPFIALPCQHRYCYYCIRTRCASAASFRCLRCNEPVVAIQR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
878	14			85	0.993533
1159		66		33	1.0
1160	11		88		0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain