SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8935

Length: 2563 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene8935
CGTCGTGACCTTGGCTGTCACTCAAACTTTTATTTGAACGTCCTGCACCATCTCTGTCATGCAACTTTTATTTGAACTCCTGCACCATCTCTTCTGGGACGCATGTATTCGTCCCCCAGATGGAGGACCTTCGACGCCCCCTATCACTGGCAGAGACGGTTATAAATCACTGTATTGTGAAAGACGCAGAAAGGTCAGCAATTTAGCTAAATGTCCAACCTTTGACAGACACACACGAGTTTTGAATATAAATAGCAAGGAAACTGACCTATCTGGCAGTGGCGATGGCAAAAGCAATGGAAGGGGAGTGGATGTTTCATCTGCGACTACTATCACAGAGTACAAGGGACTCTACTTATGTCAATGATCCTGCCAATGATGTTACCCTCATCCAATCTGTGAATAAGCTCTACGAAATCTGCAAGGCCGAAAACTCAGAAGATCTGGTAGCGAGAATTTATCCACAAATCAACAAACTCTTCCAACGTTGCATTGCTTCTATGCCCAATTCAAGATCCTCTGCTGGACTTCTCCTTCTGGCAATTCTTCAGTTTTTACTGGATTATGGGGAGACAACTTTGCATGATGCAGATGCTAGCATCCGAACATTCTTCCGTTCATGTCTAAGCCGGCAATTTACAGATTCTTTAGTAGCTGCAGCAACTCTTAATTTTCTCAACCGGAATAAAACAAAGTTGTTCAATGCGTATCCATCTCTTCTTCCTGAGTATTTTCCTCTGTTTCTAAAGCTGATTGCATGGAATGGAGGGACGTTGGAAAAAACCTTTTTGAAGCTTCTTCCTGGAATGATGTCTCCTACATCTTTTCTGCCCCTTTTTCCTGCTCTCATTGATTTACCAACACTAGTACTGGCCTTAGAAAGATTGGGACAGGGCTCAGGATCACTAGTCGGAAATAATGCAGCTTCCATTCAAAAAAGTCAAACCCCCGAGAATTTGCTACAACTTATGGATGAAGCTTATACTGGTTCCACCATTGTGGATCGTGGTGGGGATTCTGGAGATGAGAATATTGGATCTAGGGATGATATGGAAGCTTTATTTCTTGATCTTCTAAAGGATGAGAATGATGGTTTAACAGAGCGCCATTGGACATCACCACACATGGCTGCTTTACTACAAGCGGCCATGGGTTCGACACAATCAGAAAGGCTAAAACAGGCTTTCAAGATGGCTCCTCGTCTTCTTGAAGTATATTTCAGGATTGCATTGCGTGATGTGAATGATTCTCTGATTTGTGCATTAATACCAATAATCATGGCAAGAAATTCTACGTTGATTCCTGAAAAAAAGACTGCTTTTGAGATACAAAAAAGACTTTTGGAATTCATGCTTTCTGCATTTCAGCGGTCTCCACATTTTATTGCACTGCTGAAGAAGCCAATAATGGACAGGATTGGGGAAGCTTATGACAGCCCTGCAAAGACAGAGCTAGCATTGCAGTTATGCTGGGCAATTGGTGAACACGGAGGTGGTGGCATATCTCATAAGGATGCAGCTAGGGAACTATTTGAGAGCTTGGAATTGCTATTATATGAAAATCTTTCATCCAGTCGTCTTGCATTGAATCATGATATGGCCAGCAATTATGAAGGAGTGATTCTTAAGAAGTCTGGACAGGCAAGATTTCTCTGTTTTGTGGTGACAGCTATTGCAAAGCTTGCCACATACCATCGAGAGTTGATCCCAAGAGCCCGTGTATGTTTGGCTAAGGTTGCACGCTCTCGATATGTCTTGGACAAAACAGTTTGGATGCATGCACGAGACTATTTGGGTTTAATGAATGAGCCTGCTATATGCTTATCCATTCTTGGGCCTTCAAGTGGTTCCCACCATTGTCCTGCAACTGTACGCTGGAGTGAAGGTGGAGCGAAGGCTGTTGCACATATCCCCTTTTACCTCTTGGGAGAAAAAGATGGTCCACCATTTCATGATTACTCTCTCTCAGACATTGTGGGGAAAACCTGAAAGAAATATAATCATAGCCCTTGGGAATTTCATTAAACTGAAGATTTTCTCCTCCTATCCCTATATGATAAGATAGCATCTTACATTGTACTCATAATCAACTTAACTGAATCTCTTTTTGGCATATCCTATTTGTCTGGCCTTTACAAAGTGTCTCGCTTTCATGATGGTAACCTTAGCAGCAATTTCAGATATTGCAGTCTTCGTGCTGTTGTGGTTATACTTTGTGGCACACATAAATGTCCATTGATATCCTACCATATACACGGTGGGTGTGCTTGGCAGGTAATTTTTGCCTTGTAAATTTTCCATCTCCTTGTACCCCTTCCTATATTTATCAGCAGAATTATGTAGGCAAACAATAATACATTGGTTATTATAATATTATGTGAAACAAGCTGGATTTGCAGAAACTTGCGTTATTTTGTGTACAATAAAAGAGGAAAAGGCTAGTGTGATGCTGGGTAAGAATGTTGTATGATCAACATATCCCTTGTAATTATAAAAATTGAGTTTGTATTGACCATTGTAGAAATTTACCATTCATTAATGTGAAGAAAGATATCGACATTGTT

Ace file of the UniGene sp_v2.0_unigene8935

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein kiaa0415-like	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	74%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A830

Fln msg: your sequence is longer than subject: 568 - 130

Fln protein: MAKAMEGEWMFHLRLLSQSTRDSTYVNDPANDVTLIQSVNKLYEICKAENSEDLVARIYPQINKLFQRCIASMPNSRSSAGLLLLAILQFLLDYGETTLHDADASIRTFFRSCLSRQFTDSLVAAATLNFLNRNKTKLFNAYPSLLPEYFPLFLKLIAWNGGTLEKTFLKLLPGMMSPTSFLPLFPALIDLPTLVLALERLGQGSGSLVGNNAASIQKSQTPENLLQLMDEAYTGSTIVDRGGDSGDENIGSRDDMEALFLDLLKDENDGLTERHWTSPHMAALLQAAMGSTQSERLKQAFKMAPRLLEVYFRIALRDVNDSLICALIPIIMARNSTLIPEKKTAFEIQKRLLEFMLSAFQRSPHFIALLKKPIMDRIGEAYDSPAKTELALQLCWAIGEHGGGGISHKDAARELFESLELLLYENLSSSRLALNHDMASNYEGVILKKSGQARFLCFVVTAIAKLATYHRELIPRARVCLAKVARSRYVLDKTVWMHARDYLGLMNEPAICLSILGPSSGSHHCPATVRWSEGGAKAVAHIPFYLLGEKDGPPFHDYSLSDIVGKT*

Protein Length: 569

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTTTATTTGAACGTCCTGCACCATCTCTGTCATGCAACTTTTATTTGAACTCCTGCACCATCTCTTCTGGGACGCATGTATTCGTCCCCCAGATGGAGGACCTTCGACGCCCCCTATCACTGGCAGAGACGGTTATAAATCACTGTATTGTGAAAGACGCAGAAAGGTCAGCAATTTAGCTAAATGTCCAACCTTTGACAGACACACACGAGTTTTGAATATAAATAGCAAGGAAACTGACCTATCTGGCAGTGGCG_-_ATGGCAAAAGCAATGGAAGGGGAGTGGATGTTTCATCTGCGACTACTATCACAGAGTACAAGGGACTCTACTTATGTCAATGATCCTGCCAATGATGTTACCCTCATCCAATCTGTGAATAAGCTCTACGAAATCTGCAAGGCCGAAAACTCAGAAGATCTGGTAGCGAGAATTTATCCACAAATCAACAAACTCTTCCAACGTTGCATTGCTTCTATGCCCAATTCAAGATCCTCTGCTGGACTTCTCCTTCTGGCAATTCTTCAGTTTTTACTGGATTATGGGGAGACAACTTTGCATGATGCAGATGCTAGCATCCGAACATTCTTCCGTTCATGTCTAAGCCGGCAATTTACAGATTCTTTAGTAGCTGCAGCAACTCTTAATTTTCTCAACCGGAATAAAACAAAGTTGTTCAATGCGTATCCATCTCTTCTTCCTGAGTATTTTCCTCTGTTTCTAAAGCTGATTGCATGGAATGGAGGGACGTTGGAAAAAACCTTTTTGAAGCTTCTTCCTGGAATGATGTCTCCTACATCTTTTCTGCCCCTTTTTCCTGCTCTCATTGATTTACCAACACTAGTACTGGCCTTAGAAAGATTGGGACAGGGCTCAGGATCACTAGTCGGAAATAATGCAGCTTCCATTCAAAAAAGTCAAACCCCCGAGAATTTGCTACAACTTATGGATGAAGCTTATACTGGTTCCACCATTGTGGATCGTGGTGGGGATTCTGGAGATGAGAATATTGGATCTAGGGATGATATGGAAGCTTTATTTCTTGATCTTCTAAAGGATGAGAATGATGGTTTAACAGAGCGCCATTGGACATCACCACACATGGCTGCTTTACTACAAGCGGCCATGGGTTCGACACAATCAGAAAGGCTAAAACAGGCTTTCAAGATGGCTCCTCGTCTTCTTGAAGTATATTTCAGGATTGCATTGCGTGATGTGAATGATTCTCTGATTTGTGCATTAATACCAATAATCATGGCAAGAAATTCTACGTTGATTCCTGAAAAAAAGACTGCTTTTGAGATACAAAAAAGACTTTTGGAATTCATGCTTTCTGCATTTCAGCGGTCTCCACATTTTATTGCACTGCTGAAGAAGCCAATAATGGACAGGATTGGGGAAGCTTATGACAGCCCTGCAAAGACAGAGCTAGCATTGCAGTTATGCTGGGCAATTGGTGAACACGGAGGTGGTGGCATATCTCATAAGGATGCAGCTAGGGAACTATTTGAGAGCTTGGAATTGCTATTATATGAAAATCTTTCATCCAGTCGTCTTGCATTGAATCATGATATGGCCAGCAATTATGAAGGAGTGATTCTTAAGAAGTCTGGACAGGCAAGATTTCTCTGTTTTGTGGTGACAGCTATTGCAAAGCTTGCCACATACCATCGAGAGTTGATCCCAAGAGCCCGTGTATGTTTGGCTAAGGTTGCACGCTCTCGATATGTCTTGGACAAAACAGTTTGGATGCATGCACGAGACTATTTGGGTTTAATGAATGAGCCTGCTATATGCTTATCCATTCTTGGGCCTTCAAGTGGTTCCCACCATTGTCCTGCAACTGTACGCTGGAGTGAAGGTGGAGCGAAGGCTGTTGCACATATCCCCTTTTACCTCTTGGGAGAAAAAGATGGTCCACCATTTCATGATTACTCTCTCTCAGACATTGTGGGGAAAACCTGA___AAGAAATATAATCATAGCCCTTGGGAATTTCATTAAACTGAAGATTTTCTCCTCCTATCCCTATATGATAAGATAGCATCTTACATTGTACTCATAATCAACTTAACTGAATCTCTTTTTGGCATATCCTATTTGTCTGGCCTTTACAAAGTGTCTCGCTTTCATGATGGTAACCTTAGCAGCAATTTCAGATATTGCAGTCTTCGTGCTGTTGTGGTTATACTTTGTGGCACACATAAATGTCCATTGATATCCTACCATATACACGGTGGGTGTGCTTGGCAGGTAATTTTTGCCTTGTAAATTTTCCATCTCCTTGTACCCCTTCCTATATTTATCAGCAGAATTATGTAGGCAAACAATAATACATTGGTTATTATAATATTATGTGAAACAAGCTGGATTTGCAGAAACTTGCGTTATTTTGTGTACAATAAAAGAGGAAAAGGCTAGTGTGATGCTGGGTAAGAATGTTGTATGATCAACATATCCCTTGTAATTATAAAAATTGAGTTTGTATTGACCATTGTAGAAATTTACCATTCATTAATGTGAAGAAAGATATCGACATTGTT

Fln Alignment:

Contig8935___MASNYEGVILKKSGQARFLCFVVTAIAKLATYHRELIPRARVCLAKVARSRYVLDKTVWMHARDYLGLMNEPAICLSILGPSSGSHHCPATVRWSEGGAKAVAHIPFYLLGEKDGPPFHDYSLSDIVGKT
D5A830______________MVSNYEGMILKKSGQARFLCFVVTAIAKLATYHRELIPRARVCLAKVARSRYVLDKTVWMRARDYLGLMNEPAICLSILGPSSGSHHCPATVRWSEGGTKAVAHIPFYLLGEKDGPPFHDYSLSDIVGKT

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
43		55	44		1.0
50	55			44	1.0
52		55	44		1.0
53			44	55	1.0
60		44		55	1.0
61			55	44	1.0
64	88			11	0.923564
65	11			22	0.999999
66		66		33	1.0
329			11	88	0.923564
330	88			11	0.923564
333	88		11		0.923564
335		88	11		0.923564
338	88	11			0.923564
339			88	11	0.923564
340	88			11	0.923564
343	88		11		0.923564
346	88			11	0.923564
348			88	11	0.923564
349		11	88		0.923564
359	81	18			0.999994
365	81	18			0.999994
367		18	81		0.999994
413	88			11	0.923564
584	87		12		0.992554
586		12	87		0.992554
587	87		12		0.992554
591	87	12			0.992554
592			87	12	0.992554
593	87			12	0.992554
594			12	87	0.992554
598	87		12		0.992554
599			87	12	0.992554
605			87	12	0.992554
606	87	12			0.992554
707		75		25	0.996473
717	12			87	0.992554
718	12	87			0.992554
815		80		20	0.995493
892		66		33	0.997452
1836		20	80		0.995493
1838		80		20	0.995493
1840			20	80	0.995493
1842		80	20		0.995493
1844	80	20			0.995493
1845			80	20	0.995493
1849		20		80	0.995493
1851		80	20		0.995493
1852		80		20	0.995493
2030		16	83		0.994512
2031	83		16		0.994512
2032	83			16	0.994512
2035		16		83	0.994512
2036		20		80	0.995493
2039		83	16		0.994512
2040			16	83	0.994512
2042		83	16		0.994512
2052			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain