SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8912

Length: 1650 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8912

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase n=1 Tax=Populus trichocarpa RepID=B9H0D3_POPTR	-	-	70%
FL-Next	sp=Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; Ipomoea batatas (Sweet potato) (Convolvulus batatas).	-	-	72%
Blast2go	alpha- glucan phosphorylase l chloroplastic amyloplastic-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphorylase.	EC:2.4.1.1	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	82%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	82%
Blast2go	identical protein binding	GO:0042802	Molecular Function	82%
Blast2go	phosphorylase activity	GO:0004645	Molecular Function	82%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	82%
Blast2go	amyloplast	GO:0009501	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 35	IPR000811	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Glycogen/starch/alpha-glucan phosphorylase	IPR011833	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P27598

Fln msg: Distance to subject end: 471 aas, your sequence is shorter than subject: 535 - 955

Fln protein: MGNPIYISISSCYSSSRKHSRVCAANSEVAGSNLVKRREEMAASCGQAHAFLLRSECNRGSLAHRSSFTGTQLKPWLGRFPRSGCPCPLVSIRSVASEPKTKHTFGEEIPAVAQPTAADPSSIASNIKYHAEFTPCFSPFKFELPQAYVATAESVRDSLIRRWNEITEYYDEINPKQTYYLSMEFLQGRALLNAIGNLELTDAYAEALSKLGSNLESVAEQEPDAALGNGGLGRLASCFLDSLATLDYPAWGYGLRYKYGLFHQNITKDGQEEVAESWLEMGNPWEIARHDVSYPIKFFGKVENRPDGTKRWVGGEDVKAIAYDVPIPGYKTKTTLNLRLWTTEVRAEDFDLQAFTAGEHNKAAEAQLNAAKICYVLYPGDESTEGKVLRLKQQYTLCSASLQDIISRFKGRSGHSLNWEEFPEKVAIQMNDTHPTLSVPELMRILIDMEDLPWEKAWNITQRTVAYTNHTVLPEALEKWPFELMQKLLPRHMEIIRTIDEEFIKEVIAKSNTVDLKELEKKIRGMRILEIDDYI

Protein Length: 536

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACGTTGGCTACTATC_-_ATGGGGAACCCGATCTACATCTCAATCAGCTCATGCTACTCTTCCAGTAGAAAACACTCTCGAGTCTGTGCAGCGAACTCAGAGGTTGCGGGATCGAATCTCGTTAAACGAAGAGAAGAGATGGCAGCCTCATGCGGTCAGGCGCATGCGTTTCTCCTTCGTTCTGAGTGTAACCGGGGATCCCTTGCTCATCGATCGAGTTTTACTGGAACGCAGCTGAAGCCATGGCTGGGGAGATTTCCTCGCTCTGGCTGCCCGTGTCCACTCGTTTCCATTCGCAGCGTCGCCAGCGAACCTAAAACAAAACATACTTTTGGCGAAGAAATTCCTGCTGTTGCTCAGCCTACGGCGGCAGATCCTTCATCTATTGCGTCAAATATTAAATATCATGCAGAGTTCACGCCTTGTTTCTCGCCTTTTAAATTTGAGCTGCCACAAGCTTACGTGGCGACTGCGGAGAGCGTACGAGATAGTCTGATCCGACGATGGAATGAGATAACAGAGTACTATGATGAGATTAATCCTAAGCAGACTTATTATTTATCAATGGAGTTTTTACAGGGTAGGGCTCTGTTGAATGCAATTGGTAATTTAGAGCTGACAGATGCATATGCGGAGGCTTTGAGCAAGCTGGGATCTAATCTGGAAAGTGTTGCTGAGCAGGAGCCAGATGCAGCACTTGGAAATGGAGGGTTGGGAAGGTTGGCTTCATGTTTTTTGGATTCCTTGGCAACACTTGATTATCCTGCATGGGGCTATGGACTTCGATACAAGTATGGCCTTTTCCATCAGAATATAACAAAAGATGGTCAGGAGGAAGTAGCTGAAAGCTGGCTGGAGATGGGGAATCCTTGGGAAATTGCAAGGCATGATGTTTCGTACCCTATTAAATTTTTTGGAAAAGTTGAGAATAGGCCTGATGGGACAAAACGCTGGGTTGGTGGGGAGGATGTTAAGGCAATTGCATATGATGTTCCAATCCCTGGCTATAAGACCAAAACCACACTCAATTTACGTTTGTGGACAACAGAAGTTCGTGCTGAAGATTTTGATCTTCAAGCATTCACTGCAGGTGAACACAACAAAGCAGCGGAGGCCCAACTTAATGCAGCAAAGATTTGCTATGTTTTGTATCCAGGGGATGAATCTACTGAGGGAAAGGTTCTTCGTTTGAAGCAACAGTATACATTGTGCTCAGCTTCTCTTCAAGATATAATCTCCCGTTTCAAAGGACGTTCTGGACACAGTTTGAATTGGGAAGAGTTTCCAGAAAAGGTTGCAATCCAGATGAATGACACACATCCAACATTATCGGTACCTGAGTTGATGCGGATCTTGATTGACATGGAAGATCTGCCTTGGGAGAAAGCCTGGAATATTACTCAGAGAACAGTGGCATACACAAATCATACTGTGCTTCCTGAAGCATTGGAGAAGTGGCCTTTTGAGCTTATGCAAAAGCTTCTTCCAAGACACATGGAGATAATACGAACTATTGATGAGGAGTTCATCAAGGAAGTCATTGCCAAGAGTAATACGGTAGATCTTAAAGAATTGGAAAAGAAGATCAGAGGAATGAGAATCCTGGAAATTGATGACTACATT

Fln Alignment:

Contig8912___KTKHTFGEEIPAVAQPTAADPSSIASNIKYHAEFTPCFSPFKFELPQAYVATAESVRDSLIRRWNEITEYYDEINPKQTYYLSMEFLQGRALLNAIGNLELTDAYAEALSKLGSNLESVAEQEPDXXXXXXXXXXXXSCFLDSLATLDYPAWGYGLRYKYGLFHQNITKDGQEEVAESWLEMGNPWEIARHDVSYPIKFFGKVENRPDGTKRWVGGEDVKAIAYDVPIPGYKTKTTLNLRLWTTEVRAEDFDLQAFTAGEHNKAAEAQLNAAKICYVLYPGDESTEGKVLRLKQQYTLCSASLQDIISRFKGRSGHSLNWEEFPEKVAIQMNDTHPTLSVPELMRILIDMEDLPWEKAWNITQRTVAYTNHTVLPEALEKWPFELMQKLLPRHMEIIRTIDEEFIKEVIAKSNTVDLKELEKKIRGMRILE
P27598______________ETKQTIQHVVTEKNEGTLLDAASIASSIKYHAEFSPAFSPERFELPKAYFATAQSVRDALIVNWNATYDYYEKLNMKQAYYLSMEFLQGRALLNAIGNLELTGEYAEALNKLGHNLENVASKEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIIRMDVSYPVKFFGKVITGSDGKKHWIGGEDILAVAYDVPIPGYKTRTTISLRLWSTKVPSEDFDLYSFNAGEHTKACEAQANAEKICYILYPGDESIEGKILRLKQQYTLCSASLQDIIARFERRSGEYVKWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSYELMEKLLPRHIEIIEMIDEQLINEIVSEYGTSDLDMLEKKLNDMRILE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
47	66	33			0.997452
48		33		33	0.997753
49	33		66		1.0
50		33	66		1.0
52		66	33		0.997452
76			66	33	0.997452
134		33		66	0.997452
179	54		45		1.0
260	57		42		1.0
261	42	57			1.0
1291	18	81			0.999994
1605	25		75		1.0
1606		25	75		1.0
1608	75			25	1.0
1609	75			25	1.0
1638	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain