SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8889

Length: 561 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene8889
CGTCGTGACCTTGGCTGTCACTCAACTTTCATAGATAACCATGACACTCGATCCACTCAGTGCCACTGGCCTTTTCCTCCTCACAAAGTCATGCTCGGATACGTTTACATTCTCACTCACCCGGGAATCCCCTGCATATTCTATGATCATTTCTTTGACTGGGGTCTGGGTGAGAAGATCACAGAACTGGTAACAATACGGAGGAGAAACAATATCAGAGGTAACAGCAAGTGCACCATTTTGGTAGCAGACGGGGATCTGTACATGGTATCCATTGACGACAACAAATTGATTGTGAAGATTGGCCCAAGGTTCGACATTGGAGGCCTCGCTCCATCTTCCCAGGACTTTGATATTGTAGCAGTGGGGCATGAGTACTGTGTTTGGGAGAAGAAATCAAGTGTAAGTGAATATGACTGTGAATTTGCTTGTGATACTGATCTAGCTGCAGCCATTGCTTAGGTACAAGTCTCTTATTGTCACTGACGTGTGGATTGGTGGGGAGTGTGATAGAATAATATGTATATGTAGTTACACTGCATATGATGTACCTGCCTTCGC

Ace file of the UniGene sp_v2.0_unigene8889

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative alpha-amylase n=1 Tax=Ceratopteris richardii RepID=Q0QJL6_CERRI	-	-	1.4013e-45	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	alpha-amylase	-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	0.0	75%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		75%
Blast2go	Metabolic pathways	01100		75%
Blast2go	Transferases, Transferring phosphorous-containing groups, Nucleotidyltransferases.	EC:2.7.7.-	-	75%

Source	KEGGs	Term	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	75%
Blast2go	Lipopolysaccharide biosynthesis	00540	75%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	sucrose catabolic process	GO:0005987	Biological Process	75%
Blast2go	starch catabolic process	GO:0005983	Biological Process	75%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	75%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	75%
Blast2go	nucleotidyltransferase activity	GO:0016779	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr histidine phosphorylation site	IPR001020	-	-
Sma3	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: your sequence is shorter than subject: 154 - 448

Fln protein: RRDLGCHSTFIDNHDTRSTQCHWPFPPHKVMLGYVYILTHPGIPCIFYDHFFDWGLGEKITELVTIRRRNNIRGNSKCTILVADGDLYMVSIDDNKLIVKIGPRFDIGGLAPSSQDFDIVAVGHEYCVWEKKSSVSEYDCEFACDTDLAAAIA*

Protein Length: 155

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTCATAGATAACCATGACACTCGATCCACTCAGTGCCACTGGCCTTTTCCTCCTCACAAAGTCATGCTCGGATACGTTTACATTCTCACTCACCCGGGAATCCCCTGCATATTCTATGATCATTTCTTTGACTGGGGTCTGGGTGAGAAGATCACAGAACTGGTAACAATACGGAGGAGAAACAATATCAGAGGTAACAGCAAGTGCACCATTTTGGTAGCAGACGGGGATCTGTACATGGTATCCATTGACGACAACAAATTGATTGTGAAGATTGGCCCAAGGTTCGACATTGGAGGCCTCGCTCCATCTTCCCAGGACTTTGATATTGTAGCAGTGGGGCATGAGTACTGTGTTTGGGAGAAGAAATCAAGTGTAAGTGAATATGACTGTGAATTTGCTTGTGATACTGATCTAGCTGCAGCCATTGCTTAG___GTACAAGTCTCTTATTGTCACTGACGTGTGGATTGGTGGGGAGTGTGATAGAATAATATGTATATGTAGTTACACTGCATATGATGTACCTGCCTTCGC

Fln Alignment:

Contig8889___TFIDNHDTRSTQCHWPFPPHKVMLGYVYILTHPGIPCIFYDHFFDWGLGEKITELVTIRRRNNIRGNSKCTILVADGDLYMVSIDDNKLIVKIGPRFDIGGLAPSSQDFDIVAVGHEYCVWEKKSS
A9NUX3______________TFIDNHDTGSTQNIWPFPSDKLLQGYAYILTHPGIPTIFYDHFVDGNLKKEIQNLSAIRKRNNINANSNCRIITAESDLYMAAIDE-KIVVKIGSRYDVGNLAPPSPEFRVVASGNGYCVWEKNSS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
267	80		9		0.999537
269		14	85		1.0
272	90		9		0.999872
273	9			90	0.999872
280	90		10		0.999898
283	90			10	0.999898
286	80	5			1.0
308		45		55	1.0
558	16	66		16	0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain