SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8882

Length: 2801 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene8882
CGTCGTGACCTTGGCTGTCACTCATTTCTACGTCTTCACGTCTTCGAAGATATATAAATATAACTACTTGGCAGAAGAGCCATGCAGGTGTCAGGCTGAGGCAATCTGCCTTTCACCTCTGTCTTTGTCATCCAGACCCCAGCTGCAATCATTTGGCCCCTTTCTCTGTTTCGTGACATTTTAATCCATTTCCCTGGTACTACTCCATTAATAGATCTTGACAGGGTGCCCTTCATAAAATCCAACCAGCAGGCATTTATATACCTTTATTTTCTCAGCTATGGAAGCTCTCATGGCAATCGTGGCCTGCAATCCCGGGTGCTTCTGTGTTTCTTCTCAGGTACCTAAAAACTCGAAGGCAGGATATATGTCACTTTCTTCTTCGGTATCCCACTTAGGAAGTGTGGGCAAGAGGTTAAGCAGAGGCCAGCATGTAGATTCCTCGTATATTTGGCATCAGCAAATGATACGAGGACAGTATTCTCCAGGAAGCAGACTGCAGGATTCGAACACAGTCACTGGAGGAACGGGCTTCAGGAAGGAGGATCTTCTGATAGAAAAAGCCGAGGGTGTGCTGACAGATGAAGTTGCGGCACCTGCTAAAGAGGGAATGGCTAAAGAAGCTATTCCCACTTTAGTCTATGGCCACCAAGGTATTCATGAAACACATGAAAAGGAGGAGCATATTTTACCCAATCGTGAAATAGTTACTGGGGATGATGTGGCAGAAGGAAGCCGACGCACCAAAATTTCACACAATATTATTTTTGTAGCAGCTGAAGTTGCTCCATACTCAAAAACAGGAGGTCTTGGAGATGTCTGTGGTTCTCTACCTATTGCCCTTGCTGCTCGAGGCCATCGTGTGATGGTAATATCTCCAAGATATTTGAATGGTGTGACAGATAAGAAGTACAGTGGGGCTTTTGATGTTCAGTGTCGCATTAAAATCATGTGCTTTGGTGGGGAACATCAAGTCGCATTTTTTCATGAGTACAGGGCAGGCGTTGATTGGGTATTTGTTGATCATCCTTCTTTTCACCGGCCTGGTAATCCATATGGTGATAATTTTGGTGCTTTTGGCGATAATCAGTTCCGCTTCACTCTTCTGTGCCATGCTGCTTGTGAGGCTCCTTTAGTACTCCCCTTGGGAGGATTTACATATGGAGAAAAGTGTATATTTATAGCAAATGACTGGCATGCAAGTCTCGTCCCAGTTCTAATAGCAGCTCGGTATCGTCCATATGGAGTTTATCGTGATGCTCGTTCTATTCTTTCTATACATAACCTTGCACATCAGGGGGTTGAACCTGGAACAACCTATGGGAATCTGGGATTACCTCCTGATTGGTATGGATCACTGGAATGGGTCTTTCCTACATGGGCAAGAAAGCATGCTCTTGATAGAGGTGAAGCTGTTAATCATTTGAAAGGTGCAATTGTTACAGCAGATCGAATTCTGACTGTTAGTAAGGGATATGCTTGGGAAATAACAACCACTGAGGGTGGATGGGGTCTTGATGAGCTTCTACAAAGCAGAAAAGCTGTGATTAATGGCATCACGAATGGAATTGATGTTGATGAGTGGAATCCAGCTTCAGACAAACATGTCCCATTCCAGTATTCTGTAGAGGACCTTTCTGGAAAGGCAAAATGCAAGGCAGCTCTACAATTGGAGCTTGGACTTTCTGTTCGACCAGATGTGCCGCTGATTGGTTTCATTGGAAGATTGGACTACCAAAAAGGACTTGATCTTATTCAGTCAGCGCTTCCAGAACTGATGCAAGATGACGTCCAATTTGTTATGCTTGGCTCTGGAGATCCACTCATAGAGTCCTGGATGAAAATGTCAGAATCTACTTATAAAGACAGGTTCAGAGGCTGGGTTGGATTCAGTGTACCTTTTTCACACAAAATAACTGCAGGATGTGACATATTATTGATGCCATCGAGATTTGAACCCTGTGGCCTCAACCAGCTCTACGCAATGAGATATGGGACAGCTCCAGTTGTTCATTGCACTGGAGGTCTCCGGGATACTGTTGTGGACTTTGACCCTTTTGCTAATGAAGGTGAAGGTGTTGGCACGGGATGGAGATTTTCTCCGTTAACTAAGGAAGCTATGCTGGGGACATTGAGGATAGCTATCGAAACGTATCGGCGATACAAATCTTCATGGGAAGGGATCATGAAACGAGGAATGATACAAAACTACACATGGGATAATGCGGCTTCGCAATATGAACAAGTATTCGAGTGGGCTATGATAGATTCACCGTATGTCCCATAAGGAATTTCAAAATTAAGGAATCAGAATTCCATTTTTTGTTTTCATCGTGATTCTGAGTCATACCAGTTATTCTAGTGCAGTCAGTGTTCTCATTCGAAGCATGATCGCATTGCAAGCTTTTTGTTTGAGCATTGAGAGGAAATAAACTGAACAGACAAGAAAACCTGTTAACATGTCTTGAACTTGAGATAAACTTTTTGTGACAAGCCCTGTGACAAATCACTCGTGTATAATTTAGGGTAAATTTTTTAAAATTCAAATGTTTAATTTTTGAAGTATGTGGTTTGTCTCCTTAAACCAGAGATGCTCCCTTTTGTAACGTTATATTCTCACAGAAAAGCCTCAATAGGCTTTCATGACTAGTTTCTAATGGAAATAAAGCTCATGTAGTCTGTTGTTTCAAAACTGTCTTCTTTTGTAATGGTTCATTCTTGGACCTTGAAGTCATTTATTCAATTTAAGCAAAGACATTGATATTACTGGATGGATTTATGAAAATGAAGATGTGCTTTTG

Ace file of the UniGene sp_v2.0_unigene8882

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	starch synthase I [Zea mays] gb\|AAB99957.2\| plastid starch synthase I precursor [Zea mays]	-	-	73%
FL-Next	sp=Soluble starch synthase 1, chloroplastic/amyloplastic; Oryza sativa subsp. japonica (Rice).	-	-	68%
Blast2go	soluble starch synthase i	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Starch synthase.	EC:2.4.1.21	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	amylopectin biosynthetic process	GO:0010021	Biological Process	84%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	84%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	84%
Blast2go	glycogen biosynthetic process	GO:0005978	Biological Process	84%
Blast2go	starch synthase activity	GO:0009011	Molecular Function	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Dihydroxy-acid/6-phosphogluconate dehydratase	IPR000581	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q0DEC8

Fln msg:

Fln protein: MEALMAIVACNPGCFCVSSQVPKNSKAGYMSLSSSVSHLGSVGKRLSRGQHVDSSYIWHQQMIRGQYSPGSRLQDSNTVTGGTGFRKEDLLIEKAEGVLTDEVAAPAKEGMAKEAIPTLVYGHQGIHETHEKEEHILPNREIVTGDDVAEGSRRTKISHNIIFVAAEVAPYSKTGGLGDVCGSLPIALAARGHRVMVISPRYLNGVTDKKYSGAFDVQCRIKIMCFGGEHQVAFFHEYRAGVDWVFVDHPSFHRPGNPYGDNFGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCIFIANDWHASLVPVLIAARYRPYGVYRDARSILSIHNLAHQGVEPGTTYGNLGLPPDWYGSLEWVFPTWARKHALDRGEAVNHLKGAIVTADRILTVSKGYAWEITTTEGGWGLDELLQSRKAVINGITNGIDVDEWNPASDKHVPFQYSVEDLSGKAKCKAALQLELGLSVRPDVPLIGFIGRLDYQKGLDLIQSALPELMQDDVQFVMLGSGDPLIESWMKMSESTYKDRFRGWVGFSVPFSHKITAGCDILLMPSRFEPCGLNQLYAMRYGTAPVVHCTGGLRDTVVDFDPFANEGEGVGTGWRFSPLTKEAMLGTLRIAIETYRRYKSSWEGIMKRGMIQNYTWDNAASQYEQVFEWAMIDSPYVP*

Protein Length: 670

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTACGTCTTCACGTCTTCGAAGATATATAAATATAACTACTTGGCAGAAGAGCCATGCAGGTGTCAGGCTGAGGCAATCTGCCTTTCACCTCTGTCTTTGTCATCCAGACCCCAGCTGCAATCATTTGGCCCCTTTCTCTGTTTCGTGACATTTTAATCCATTTCCCTGGTACTACTCCATTAATAGATCTTGACAGGGTGCCCTTCATAAAATCCAACCAGCAGGCATTTATATACCTTTATTTTCTCAGCT_-_ATGGAAGCTCTCATGGCAATCGTGGCCTGCAATCCCGGGTGCTTCTGTGTTTCTTCTCAGGTACCTAAAAACTCGAAGGCAGGATATATGTCACTTTCTTCTTCGGTATCCCACTTAGGAAGTGTGGGCAAGAGGTTAAGCAGAGGCCAGCATGTAGATTCCTCGTATATTTGGCATCAGCAAATGATACGAGGACAGTATTCTCCAGGAAGCAGACTGCAGGATTCGAACACAGTCACTGGAGGAACGGGCTTCAGGAAGGAGGATCTTCTGATAGAAAAAGCCGAGGGTGTGCTGACAGATGAAGTTGCGGCACCTGCTAAAGAGGGAATGGCTAAAGAAGCTATTCCCACTTTAGTCTATGGCCACCAAGGTATTCATGAAACACATGAAAAGGAGGAGCATATTTTACCCAATCGTGAAATAGTTACTGGGGATGATGTGGCAGAAGGAAGCCGACGCACCAAAATTTCACACAATATTATTTTTGTAGCAGCTGAAGTTGCTCCATACTCAAAAACAGGAGGTCTTGGAGATGTCTGTGGTTCTCTACCTATTGCCCTTGCTGCTCGAGGCCATCGTGTGATGGTAATATCTCCAAGATATTTGAATGGTGTGACAGATAAGAAGTACAGTGGGGCTTTTGATGTTCAGTGTCGCATTAAAATCATGTGCTTTGGTGGGGAACATCAAGTCGCATTTTTTCATGAGTACAGGGCAGGCGTTGATTGGGTATTTGTTGATCATCCTTCTTTTCACCGGCCTGGTAATCCATATGGTGATAATTTTGGTGCTTTTGGCGATAATCAGTTCCGCTTCACTCTTCTGTGCCATGCTGCTTGTGAGGCTCCTTTAGTACTCCCCTTGGGAGGATTTACATATGGAGAAAAGTGTATATTTATAGCAAATGACTGGCATGCAAGTCTCGTCCCAGTTCTAATAGCAGCTCGGTATCGTCCATATGGAGTTTATCGTGATGCTCGTTCTATTCTTTCTATACATAACCTTGCACATCAGGGGGTTGAACCTGGAACAACCTATGGGAATCTGGGATTACCTCCTGATTGGTATGGATCACTGGAATGGGTCTTTCCTACATGGGCAAGAAAGCATGCTCTTGATAGAGGTGAAGCTGTTAATCATTTGAAAGGTGCAATTGTTACAGCAGATCGAATTCTGACTGTTAGTAAGGGATATGCTTGGGAAATAACAACCACTGAGGGTGGATGGGGTCTTGATGAGCTTCTACAAAGCAGAAAAGCTGTGATTAATGGCATCACGAATGGAATTGATGTTGATGAGTGGAATCCAGCTTCAGACAAACATGTCCCATTCCAGTATTCTGTAGAGGACCTTTCTGGAAAGGCAAAATGCAAGGCAGCTCTACAATTGGAGCTTGGACTTTCTGTTCGACCAGATGTGCCGCTGATTGGTTTCATTGGAAGATTGGACTACCAAAAAGGACTTGATCTTATTCAGTCAGCGCTTCCAGAACTGATGCAAGATGACGTCCAATTTGTTATGCTTGGCTCTGGAGATCCACTCATAGAGTCCTGGATGAAAATGTCAGAATCTACTTATAAAGACAGGTTCAGAGGCTGGGTTGGATTCAGTGTACCTTTTTCACACAAAATAACTGCAGGATGTGACATATTATTGATGCCATCGAGATTTGAACCCTGTGGCCTCAACCAGCTCTACGCAATGAGATATGGGACAGCTCCAGTTGTTCATTGCACTGGAGGTCTCCGGGATACTGTTGTGGACTTTGACCCTTTTGCTAATGAAGGTGAAGGTGTTGGCACGGGATGGAGATTTTCTCCGTTAACTAAGGAAGCTATGCTGGGGACATTGAGGATAGCTATCGAAACGTATCGGCGATACAAATCTTCATGGGAAGGGATCATGAAACGAGGAATGATACAAAACTACACATGGGATAATGCGGCTTCGCAATATGAACAAGTATTCGAGTGGGCTATGATAGATTCACCGTATGTCCCATAA___GGAATTTCAAAATTAAGGAATCAGAATTCCATTTTTTGTTTTCATCGTGATTCTGAGTCATACCAGTTATTCTAGTGCAGTCAGTGTTCTCATTCGAAGCATGATCGCATTGCAAGCTTTTTGTTTGAGCATTGAGAGGAAATAAACTGAACAGACAAGAAAACCTGTTAACATGTCTTGAACTTGAGATAAACTTTTTGTGACAAGCCCTGTGACAAATCACTCGTGTATAATTTAGGGTAAATTTTTTAAAATTCAAATGTTTAATTTTTGAAGTATGTGGTTTGTCTCCTTAAACCAGAGATGCTCCCTTTTGTAACGTTATATTCTCACAGAAAAGCCTCAATAGGCTTTCATGACTAGTTTCTAATGGAAATAAAGCTCATGTAGTCTGTTGTTTCAAAACTGTCTTCTTTTGTAATGGTTCATTCTTGGACCTTGAAGTCATTTATTCAATTTAAGCAAAGACATTGATATTACTGGATGGATTTATGAAAATGAAGATGTGCTTTTG

Fln Alignment:

Contig8882___PAKEGMAKEAIPTLVYGHQGIHETHEKEEHILPNREIVTGDDVAEGSRRTKISHNIIFVAAEVAPYSKTGGLGDVCGSLPIALAARGHRVMVISPRYLNGVTDKKYSGAFDVQCRIKIMCFGGEHQVAFFHEYRAGVDWVFVDHPSFHRPGNPYGDNFGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCIFIANDWHASLVPVLIAARYRPYGVYRDARSILSIHNLAHQGVEPGTTYGNLGLPPDWYGSLEWVFPTWARKHALDRGEAVNHLKGAIVTADRILTVSKGYAWEITTTEGGWGLDELLQSRKAVINGITNGIDVDEWNPASDKHVPFQYSVEDLSGKAKCKAALQLELGLSVRPDVPLIGFIGRLDYQKGLDLIQSALPELMQDDVQFVMLGSGDPLIESWMKMSESTYKDRFRGWVGFSVPFSHKITAGCDILLMPSRFEPCGLNQLYAMRYGTAPVVHCTGGLRDTVVDFDPFANEGEGVGTGWRFSPLTKEAMLGTLRIAIETYRRYKSSWEGIMKRGMIQNYTWDNAASQYEQVFEWAMIDSPYV
Q0DEC8______________PDLEGLTEDSIDKTIF------VASEQESEIMDVKE----------QAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGE-QGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYV

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
88		33	66		0.997452
94		66	33		0.997452
96		33	66		0.997452
100			66	33	0.997452
105	66			33	0.997452
106	66		33		0.997452
109	33			66	0.997452
110		33	66		0.997452
111		66		33	0.997452
191		50	50		1.0
277	25			75	0.996473
280		80		20	0.995493
406	33		66		1.0
469			80	20	0.995493
766	83		16		0.994512
1102			20	80	0.995493
1104		80	20		0.995493
1111		80	20		0.995493
1112			20	80	0.995493
1113		20	80		0.995493
1116		80		20	0.995493
1120		20	80		0.995493
1267	14	85			0.993533
1333		66		33	1.0
1599			27	72	1.0
1602	72		27		1.0
1606	72	27			1.0
1607	70			30	1.0
1608	70			30	1.0
1609		70	30		1.0
1610	70		30		1.0
1615	30	70			1.0
1621	30	70			1.0
2050		16	75	8	0.99999
2052	75		8	16	0.99999
2054			16	83	0.999991
2284	91		8		0.999766
2293	91	8			0.999807
2297	92	7			0.999664
2389	15	85			1.0
2458		61		38	1.0
2557		20		80	0.995493
2694		11		88	0.923564
2695		66		22	0.999999
2699	62		37		1.0
2743			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain