SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8873

Length: 2844 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene8873
TATCAACCCCATAAAATTTGGACTGATATTGAGATTTGAGATTTTCTCAACTGAACTCAAAATGGTTCATTCAGTTATAATGAATATTTGCCAAAAGCACTTGCCCAAGGAGAGCATTATGATACAATACAAACTCTTCACAAATGAGACCATTCAAACGTCGTTCTAAATTGCCAAATTTGCAGGGTTTTGGATAGGGTTTATTCCAGCTAACTCGAATGGAGTCCCTCACCACCAGAAGGACGATCACCCACTTGAGAAACGCCATCAAAAATTCCAAACGGCATTTTACAGAGTTTCAGCGGCCCATGTCAACCCCGCCATTTCCAGCCCGAAAAGCCCTAACGTCGGACCATTCGACCTTCGACCAAGCAGATATTCGACACTGGAACCCCATTTCATATCAAAGAGCAGATTACTGCATTCCCTGCAAGTGCGCGAAGAAGAAGAAGATGATGATGATACCGCCATTAACTCGTTCTTGGAAAAATTCGTTGCAGTCATGCGCACCAAGCTCTCAGAAGCTTATGTAGATGCGGACAGAGAAGTCATAAACGGTATGCTGGAAATCGTAGTGGACAAAGTCGTTACGGAGATAGAAAAAGGCACATTCGAAGCTTTCAAAAAATTTGAGGACTTTTTAGCATCTCTGGAAACAGAAGACTTCAGTCAAGATCTCTGGAAAATTGTCTGGGACGCTTCCAAGGGCATTATCGAAGACATGCACAAGGACGAATTGAAAATGGAGATTCAAATGTATTTACAGTCCGATGAGATGAAGGAAATAACTAAGTTTGCCAAGGATGCAGGCGTAACTGGGGAGCTTCTGAGGGATTTGAAAATGCATTTTGCCGAGCAGAAAAGATCGGAAATTGAGTTCTACAGAAGCCTGGATCGGTTGGCTGGTAGAGATTCTACTACAAATCTGCTTGGGAGTGGCGGTCACAGAGTAAAACTGCTTGGGAGTGGTAGAGAGCATTTGGCTGAAGGGGTTGATGAATCTGTTGAGGGCGAAGAGTCTGAAGAAAAGCCTAAGCATGGTTTGCCGCAGCGGCGAGCGAAATTGAAGTTTCAGGCATACGGGATGGATTTGTCTGATCCGAGCTGGACTGCGGTCGGCCAGAAATTGGAAGTGGCAGAGAAGAAGATAACTCCAGAAGAGCCTACTGTGATGTCTGGAAAATGTAAGTCTATCATGAAGCAGATCCTTTCCTTGTCTGATGATGACGATCCGTCGGAGTTGCTGACTCAGTTGAGGGAAAATTTGAATCCTAGAAGGGTAGATTGGCTTGCAATCCTGCAGCAATTGAGCGAGTCAAACAAGAATATATATTTTAAGGCAACAGAGTTTGCTCTAAATGAAGAATCCTTTGAAGCCAGCATTAGAGATTATACCAAACTTTTAGATGCCTATGCAAAGAAAGATCGTTTAGAAGATGCTGAAAGGGTATTGAATACTATGACAGAGAAGGGATTTGCTCGGGATGCAGTGACATGCAGTGCATTGGTTCACATGTATAGCAAGACAGGGAATCTGGATCGAGCTAGAGAGGCATTTGAACAGATAAGATCACTTGGACTTCAACCAGACCAAAAAGCATATGGCTCAATGATTATGGCTTATGTGCAAGCAGGATTGCCCAAAGCAGGAGAATCTTTGATGAGAGAGATGGAGGCCAAGGACATCAAACCAGGGAAGGAAGTTTACATGGCACTGCTTAGGGCTTTTGCACAGAGAGGTCTTGTTGATGGTGCACAGAGGATATTCAACACCATGCAGTTTTCTGGTGTCATGCCAAACTTGGAATCTTGCACGCTACTGGTCGAAGCTTATGGTCAGTCTGGAGATGCAGAGCAGGCTAGAAATGTTTTTGATCATATGATGAAAGCAGGGCACAAGCCAGATGATAAATGCACTGCTAGCATGCTAGCTGCATATGAGAAGAAGAATTATCTTGACAAGGCATTAAACTTGCTATTGGATCTTGAAAAGGATGGCTTTAAGCAAGGTCTTGAAACGTCAGCTGTATTGATTGACTGGCTTGGTAGGTTAGGCTTGGTGTATGAAGCCGAGCAAGCTTTTACTGAGATTGCTGGGAAGGAAAGAGTTCCCTCCAAGGTTTGTATTAGTCTATGTGATATGTATGCAAGGAGTGGCTTACAACAAAAGGCATTAGACACACTGAATACAATATGGAACAATGCAGAAACTTTGGATTCACATCAATATGAAAGGCTGATGCACGGGCTTTTAGCTGGTGGCCTTGTAGAGGAAGCAAAAAGAATAAACGACCGTATGCAGAGTCAAGGTTTAGTTCCTTCAGAGCCTGCCCGAGTAGCACTGATGGCAGCTCAAGCCATTTCACGTCGGAAGCCCACAACAAAATAGAAATCAGAGTGAGTCTATTGATCGAGTAACCCATAAGTTCTTAGCTCCCGTTCCATCTTTTTAATATAACATAAACATTTTTCTGTGGCCTTTTCTGCTGGCCTGATACCGAGATAGCATTCTTTGTGTCTGGTTATCACTGTCCTCGGGAATTCAAAAAACTATGGTATTCAATATTTTGTTTAGAGTGCAGACTATGTGCTGGCAATATTTTGATTATATCTCATTTTACTTTGCAAAATTAGCTGCTTAAGATTCAGCCAAGATTGTACATATTTTTGTTATGGAACCAACTTAGCTATCATTTTTGATCCTTTACATTTGGGATCTTCTCAGGTTATCGTGCATCACCTTTGCCGATGCTTGGGATAGCTTCCTCATGGTGTCAATAACTATATTGATTGTTGATTGCATGCTCAGATTGCGTCGCTTAAATTGAAGTTGTGTGTGCTCAG

Ace file of the UniGene sp_v2.0_unigene8873 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb\|AAF79432.1\|AC025808_14 F18O14.27 [Arabidopsis thaliana] gb\|AEE29863.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	pentatricopeptide repeat-containing protein	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	chromatin assembly or disassembly	GO:0006333	Biological Process	63%
Blast2go	DNA binding	GO:0003677	Molecular Function	63%
Blast2go	chromatin binding	GO:0003682	Molecular Function	63%
Blast2go	structural constituent of chromatin	GO:0030527	Molecular Function	63%
Blast2go	cytoplasm	GO:0005737	Cellular Component	63%
Blast2go	chromatin	GO:0000785	Cellular Component	63%
Blast2go	nucleus	GO:0005634	Cellular Component	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXP3

Fln msg: your sequence is longer than subject: 629 - 278

Fln protein: MRTKLSEAYVDADREVINGMLEIVVDKVVTEIEKGTFEAFKKFEDFLASLETEDFSQDLWKIVWDASKGIIEDMHKDELKMEIQMYLQSDEMKEITKFAKDAGVTGELLRDLKMHFAEQKRSEIEFYRSLDRLAGRDSTTNLLGSGGHRVKLLGSGREHLAEGVDESVEGEESEEKPKHGLPQRRAKLKFQAYGMDLSDPSWTAVGQKLEVAEKKITPEEPTVMSGKCKSIMKQILSLSDDDDPSELLTQLRENLNPRRVDWLAILQQLSESNKNIYFKATEFALNEESFEASIRDYTKLLDAYAKKDRLEDAERVLNTMTEKGFARDAVTCSALVHMYSKTGNLDRAREAFEQIRSLGLQPDQKAYGSMIMAYVQAGLPKAGESLMREMEAKDIKPGKEVYMALLRAFAQRGLVDGAQRIFNTMQFSGVMPNLESCTLLVEAYGQSGDAEQARNVFDHMMKAGHKPDDKCTASMLAAYEKKNYLDKALNLLLDLEKDGFKQGLETSAVLIDWLGRLGLVYEAEQAFTEIAGKERVPSKVCISLCDMYARSGLQQKALDTLNTIWNNAETLDSHQYERLMHGLLAGGLVEEAKRINDRMQSQGLVPSEPARVALMAAQAISRRKPTTK*

Protein Length: 630

Fln nts: TATCAACCCCATAAAATTTGGACTGATATTGAGATTTGAGATTTTCTCAACTGAACTCAAAATGGTTCATTCAGTTATAATGAATATTTGCCAAAAGCACTTGCCCAAGGAGAGCATTATGATACAATACAAACTCTTCACAAATGAGACCATTCAAACGTCGTTCTAAATTGCCAAATTTGCAGGGTTTTGGATAGGGTTTATTCCAGCTAACTCGAATGGAGTCCCTCACCACCAGAAGGACGATCACCCACTTGAGAAACGCCATCAAAAATTCCAAACGGCATTTTACAGAGTTTCAGCGGCCCATGTCAACCCCGCCATTTCCAGCCCGAAAAGCCCTAACGTCGGACCATTCGACCTTCGACCAAGCAGATATTCGACACTGGAACCCCATTTCATATCAAAGAGCAGATTACTGCATTCCCTGCAAGTGCGCGAAGAAGAAGAAGATGATGATGATACCGCCATTAACTCGTTCTTGGAAAAATTCGTTGCAGTC_-_ATGCGCACCAAGCTCTCAGAAGCTTATGTAGATGCGGACAGAGAAGTCATAAACGGTATGCTGGAAATCGTAGTGGACAAAGTCGTTACGGAGATAGAAAAAGGCACATTCGAAGCTTTCAAAAAATTTGAGGACTTTTTAGCATCTCTGGAAACAGAAGACTTCAGTCAAGATCTCTGGAAAATTGTCTGGGACGCTTCCAAGGGCATTATCGAAGACATGCACAAGGACGAATTGAAAATGGAGATTCAAATGTATTTACAGTCCGATGAGATGAAGGAAATAACTAAGTTTGCCAAGGATGCAGGCGTAACTGGGGAGCTTCTGAGGGATTTGAAAATGCATTTTGCCGAGCAGAAAAGATCGGAAATTGAGTTCTACAGAAGCCTGGATCGGTTGGCTGGTAGAGATTCTACTACAAATCTGCTTGGGAGTGGCGGTCACAGAGTAAAACTGCTTGGGAGTGGTAGAGAGCATTTGGCTGAAGGGGTTGATGAATCTGTTGAGGGCGAAGAGTCTGAAGAAAAGCCTAAGCATGGTTTGCCGCAGCGGCGAGCGAAATTGAAGTTTCAGGCATACGGGATGGATTTGTCTGATCCGAGCTGGACTGCGGTCGGCCAGAAATTGGAAGTGGCAGAGAAGAAGATAACTCCAGAAGAGCCTACTGTGATGTCTGGAAAATGTAAGTCTATCATGAAGCAGATCCTTTCCTTGTCTGATGATGACGATCCGTCGGAGTTGCTGACTCAGTTGAGGGAAAATTTGAATCCTAGAAGGGTAGATTGGCTTGCAATCCTGCAGCAATTGAGCGAGTCAAACAAGAATATATATTTTAAGGCAACAGAGTTTGCTCTAAATGAAGAATCCTTTGAAGCCAGCATTAGAGATTATACCAAACTTTTAGATGCCTATGCAAAGAAAGATCGTTTAGAAGATGCTGAAAGGGTATTGAATACTATGACAGAGAAGGGATTTGCTCGGGATGCAGTGACATGCAGTGCATTGGTTCACATGTATAGCAAGACAGGGAATCTGGATCGAGCTAGAGAGGCATTTGAACAGATAAGATCACTTGGACTTCAACCAGACCAAAAAGCATATGGCTCAATGATTATGGCTTATGTGCAAGCAGGATTGCCCAAAGCAGGAGAATCTTTGATGAGAGAGATGGAGGCCAAGGACATCAAACCAGGGAAGGAAGTTTACATGGCACTGCTTAGGGCTTTTGCACAGAGAGGTCTTGTTGATGGTGCACAGAGGATATTCAACACCATGCAGTTTTCTGGTGTCATGCCAAACTTGGAATCTTGCACGCTACTGGTCGAAGCTTATGGTCAGTCTGGAGATGCAGAGCAGGCTAGAAATGTTTTTGATCATATGATGAAAGCAGGGCACAAGCCAGATGATAAATGCACTGCTAGCATGCTAGCTGCATATGAGAAGAAGAATTATCTTGACAAGGCATTAAACTTGCTATTGGATCTTGAAAAGGATGGCTTTAAGCAAGGTCTTGAAACGTCAGCTGTATTGATTGACTGGCTTGGTAGGTTAGGCTTGGTGTATGAAGCCGAGCAAGCTTTTACTGAGATTGCTGGGAAGGAAAGAGTTCCCTCCAAGGTTTGTATTAGTCTATGTGATATGTATGCAAGGAGTGGCTTACAACAAAAGGCATTAGACACACTGAATACAATATGGAACAATGCAGAAACTTTGGATTCACATCAATATGAAAGGCTGATGCACGGGCTTTTAGCTGGTGGCCTTGTAGAGGAAGCAAAAAGAATAAACGACCGTATGCAGAGTCAAGGTTTAGTTCCTTCAGAGCCTGCCCGAGTAGCACTGATGGCAGCTCAAGCCATTTCACGTCGGAAGCCCACAACAAAATAG___AAATCAGAGTGAGTCTATTGATCGAGTAACCCATAAGTTCTTAGCTCCCGTTCCATCTTTTTAATATAACATAAACATTTTTCTGTGGCCTTTTCTGCTGGCCTGATACCGAGATAGCATTCTTTGTGTCTGGTTATCACTGTCCTCGGGAATTCAAAAAACTATGGTATTCAATATTTTGTTTAGAGTGCAGACTATGTGCTGGCAATATTTTGATTATATCTCATTTTACTTTGCAAAATTAGCTGCTTAAGATTCAGCCAAGATTGTACATATTTTTGTTATGGAACCAACTTAGCTATCATTTTTGATCCTTTACATTTGGGATCTTCTCAGGTTATCGTGCATCACCTTTGCCGATGCTTGGGATAGCTTCCTCATGGTGTCAATAACTATATTGATTGTTGATTGCATGCTCAGATTGCGTCGCTTAAATTGAAGTTGTGTGTGCTCAG

Fln Alignment:

Contig8873___NIYFKATEF--------ALNEESFEASIRDYTKLLDAYAKKDRLEDAERVLNTMTEKGFARDAVTCSALVHMYSKTGNLDRAREAFEQIRSLGLQPDQKAYGSMIMAYVQAGLPKAGESLMREMEAKDIKPGKEVYMALLRAFAQRGLVDGAQRIFNTMQFSGVMPNLESCTLLVEAYGQSGDAEQARNVFDHMMKAGHKPDDKCTASMLAAYE
A9NXP3______________SVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAGLVEDATRLYMEIGKAGLKSDLACHRTMLKIYRDNGRTHEGILLFEKLQNY-IEPDGNIYRMAIDLYE

SNPs (tot: 136)

Position	A %	C %	G %	T %	Probability
51	75		25		0.996473
52	75			25	0.996473
139		50		50	1.0
180	85		14		0.993533
264		80	20		0.995493
317		16	83		0.994512
329		66	33		1.0
330	66			33	1.0
331		66	33		1.0
333	66	33			1.0
336	66	33			1.0
338	33			66	1.0
340		66	33		1.0
342	66	33			1.0
343	33			66	1.0
345	16		16	66	0.988813
392	75	25			0.996473
393		25		75	0.996473
394		25		75	0.996473
396	75			25	0.996473
408	25		75		0.996473
477			20	80	0.995493
480		20	80		0.995493
481		20		80	0.995493
482		20	80		0.995493
484	80			20	0.995493
527	25		75		0.996473
602	25			75	0.996473
604		75		25	0.996473
605	75		25		0.996473
606	25			75	0.996473
612			25	75	0.996473
613			25	75	0.996473
617		25		75	0.996473
618	75		25		0.996473
619	25			75	0.996473
620		25		75	0.996473
622	33		66		0.997452
775	54		45		1.0
829			10	90	0.90298
830	10			90	0.90298
836	11	77			0.968132
839	11			88	0.923564
840	11		88		0.923564
841		88	11		0.923564
842			12	87	0.992554
844	85	14			0.993533
846	85	14			0.993533
848	14	85			0.993533
850	85		14		0.993533
879	83		16		0.994512
882	16	83			0.994512
884	16			83	0.994512
900			25	75	0.996473
901	25	75			0.996473
902			25	75	0.996473
904		75	25		0.996473
905	25			75	0.996473
909	75		25		0.996473
910		25		75	0.996473
911		25	75		0.996473
912	25	75			0.996473
915		75	25		0.996473
918		25	75		0.996473
919		75	25		0.996473
921		25		75	0.996473
1390		20		80	0.995493
1393	20			80	0.995493
1396	75			25	0.996473
1444	80		20		0.995493
1495	50	50			1.0
1506	16		83		0.994512
1660		11		88	0.923564
1661	88	11			0.923564
1668	12	87			0.992554
1671			87	12	0.992554
1672	87			12	0.992554
1875		90	10		0.90298
1876	10			90	0.90298
1877	90		10		0.90298
1878		90		10	0.90298
1879		90	10		0.90298
1882	10			90	0.90298
1893	12			87	0.992554
1894		12		87	0.992554
1895			12	87	0.992554
1898			14	85	0.993533
1899		71	14	14	0.984337
1900	14			85	0.993533
1906	14	85			0.993533
1911	14	85			0.993533
1912			14	85	0.993533
1913		85	14		0.993533
1914		85		14	0.993533
1917	85	14			0.993533
1919	14	85			0.993533
1920	83	16			0.994512
2068	20			80	0.995493
2130	20			80	0.995493
2201		40		60	1.0
2259	80	20			0.995493
2267	40		60		1.0
2294	20			80	0.995493
2296	20			40	1.0
2301			20	80	0.995493
2303		80	20		0.995493
2304	20			80	0.995493
2306	20			80	0.995493
2308		20		80	0.995493
2310	20	80			0.995493
2311	20		80		0.995493
2312		80	20		0.995493
2313	80		20		0.995493
2320			20	80	0.995493
2322	80	20			0.995493
2364		80		20	0.995493
2383			40	60	1.0
2402		60		40	1.0
2476	14	85			0.993533
2477			14	85	0.993533
2480	14		85		0.993533
2481			14	85	0.993533
2483		14	85		0.993533
2484	85		14		0.993533
2494	20		80		0.995493
2495		20	80		0.995493
2496	20			80	0.995493
2647	25		75		0.996473
2713	50			50	1.0
2718	75	25			0.996473
2719		25	75		0.996473
2720		25		75	0.996473
2722	25			75	0.996473
2735	66	33			0.997452
2736		33		66	0.997452
2737	66	33			0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
2382	2393	ATC ATC ATC ATC	12
2392	2405	TCT TCT TCT TCT TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain