SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8867

Length: 1387 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8867

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xenotropic and polytropic murine leukemia virus receptor ids-4, putative n=1 Tax=Ricinus communis RepID=B9SES9_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	spx domain-containing protein 3-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of cellular response to phosphate starvation	GO:0080040	Biological Process	0.0	62%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	SPX, N-terminal	IPR004331	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNU0

Fln msg: your sequence is longer than subject: 321 - 238

Fln protein: MKFGRILKSQIEEAPPEWRDQYLSYKKLKKRLKLIFSLKVFQEAEDETPKVVRKRPRIEALGVPECVAERESDSYSFAKRNDSNDCASIGSNQDDDLNDIKDMSAAEFDFIELLNPELEKFNDFVMAKEKEYIIRQKELQERIQRARNTVRPSGKQDLIKVSQDVVKFHGEMVLLESYSILNFTGLVKITKKYDKRTGGILRLAFIQKVLGQPFFTMELLFKLVKQCEETLHNLFSSSEDEGEETEYEEEETEDEAVVDLGQDQIYRSTMAALRSMKEMRRGSSTYGPFSLPPLYHDMPPASSSSIPTSHQSTILSDSSL*

Protein Length: 322

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGTTATGTGTTTGTGAATTGTCAATTCTAGATTGGATCCAGTTTGTAATTCGCTCCGAGTCCGAATTTCAGACCTCTGTTTCTTTTTCCAAGTGCAGAAACTTCGGTATACTGGGAATGCCAGAGGTGTTTGAATGCAGATGGAAATGATCTTTTAAATACAGTTGGAAATACAAAATTTTCTACGACGGAAATGCTTTAAGCTAACCATCAAA_-_ATGAAATTCGGAAGAATTCTGAAGAGCCAGATCGAAGAAGCTCCACCTGAATGGCGAGACCAATATCTGTCTTACAAAAAACTCAAGAAACGTCTGAAGTTAATTTTTTCTTTAAAAGTATTTCAGGAAGCCGAAGACGAGACGCCAAAAGTAGTCCGTAAGAGGCCAAGGATCGAAGCGCTGGGAGTTCCAGAGTGTGTAGCCGAAAGAGAAAGTGATTCTTATTCTTTCGCTAAAAGAAATGATTCAAACGACTGTGCAAGCATTGGCTCGAATCAAGACGATGATCTTAATGATATCAAAGACATGTCTGCGGCAGAATTCGATTTCATAGAGCTGCTAAATCCGGAGCTTGAGAAGTTTAATGATTTCGTCATGGCTAAGGAAAAGGAGTACATCATCCGTCAAAAGGAATTGCAGGAGAGGATTCAAAGGGCGAGGAATACTGTCCGTCCGAGCGGCAAGCAAGATTTGATCAAAGTCAGCCAGGACGTTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAGTTACAGCATTTTGAATTTCACCGGTTTGGTAAAAATAACAAAGAAATACGATAAAAGAACCGGCGGAATCCTGCGTCTGGCGTTCATTCAGAAGGTTTTAGGGCAGCCGTTTTTCACCATGGAACTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACCCTTCATAACCTATTTTCCTCTTCAGAGGACGAGGGAGAAGAAACAGAGTACGAGGAAGAAGAAACAGAGGACGAAGCGGTGGTGGATCTGGGGCAAGACCAGATATACAGAAGCACCATGGCCGCCCTTCGCAGCATGAAAGAAATGCGCAGAGGCAGTTCTACTTACGGCCCCTTCTCGCTTCCTCCACTGTATCACGATATGCCCCCGGCGTCCTCCTCATCGATCCCAACAAGTCACCAATCGACAATTCTCTCGGATAGTTCATTGTAG___ACATTTTACTCTCGTCATGAATGCCCCTATTTGATCCTTGTGTGTGGGGTTTATTTAAATTTCATGCGGAGAGTAAAAATAGGACAAAGATTTGAGAAATTAAGCTTATTTCAATATTTCTCAAAATCATTCTAAGAGTGTTAGTATTAAGTTTAGCTGTAAATATATTTGGATGGGTTAAAAGG

Fln Alignment:

Contig8867___MAKEKEYIIRQKELQERIQRARNTVRPSG--------KQDLIKVSQDVVKFHGEMVLLESYSILNFTGLVKITKKYDKRTGGILRLAFIQKVLGQPFFTMELLFKLVKQCEETLHNLF-----------------------SSSXXXXXXXXXXXXXXXXXAVVDLGQ--------------------DQIYRSTMAALRSMKEMRRGSSTYGPFSLPPL
B8LNU0______________MEQEEEYIIRQKELQDRIEKLKSNSRQNATVFSQTEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGLAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLISECENTLQSLFPDYPKSLLQVPAGPSSNGNQAEASSSAGNSDLQRLREPPPAATTQAEFGEENSPLKGKGDEDGDRDAEGMESIYRSTMAALRTMREIRRGSSTYSVFSLPPL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
39			66	33	1.0
43	87		12		0.992554
45		12		87	0.992554
46		12	87		0.992554
154	11		88		0.923564
155		11		88	0.923564
164	87			12	0.992554
202	85	14			0.993533
691		40	60		1.0
778	87			12	0.992554
800		12		87	0.992554
1285	12		87		0.992554
1360		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain