SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8853

Length: 1489 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8853

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] dbj\|BAB01853.1\| beta-1,3-glucanase [Arabidopsis thaliana] gb\|ABE65959.1\| glycosyl hydrolase family 17 protein [Arabidopsis thaliana] gb\|AEE76811.1\| O-Glycosyl hydrolases family 17 protein [Ara	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	65%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	65%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	65%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	65%
Blast2go	Glycosaminoglycan degradation	00531	65%
Blast2go	Metabolic pathways	01100	65%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	65%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	65%
Blast2go	cation binding	GO:0043169	Molecular Function	65%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKM5

Fln msg: your sequence is shorter than subject: 341 - 494

Fln protein: AMANIHASLLLTLRSFADSIKVTTSLAMDVLSSSYPPSAGTFRSDVASPVLQPLLDFANRTGSFVFLDIYPFFAWSANPANVSLDYATLSLDHNTAEFQDAGLSYSNMLDAQLDAVLAAMDRLGFPSVNVVIGETGWPTKGDDNQPGTNVPNATLYNQQLVQKALADPPRGTPRRPGAFIPTYIFSLFNEDQKPGPTTERNWGLFYPNGTPVYPIVLSNDAPVLSHISVPSQNNAPFPSTPPGPVAVAQWCVVSPVAVAQQDETSLQAALDYACGAGADCSLIEPGEPCYLPNTLVSHASYAFNSYWQRNKAAGATCDFNGSAVLSSSDPSVGDCVFDHM*

Protein Length: 342

Fln nts: GGCCATGGCCAACATCCACGCCTCCTTACTTCTAACCTTACGGTCCTTCGCTGATTCCATCAAAGTCACGACATCCCTAGCCATGGACGTGCTCTCTTCTTCCTACCCGCCCTCCGCGGGCACCTTCCGGAGCGACGTCGCCTCCCCGGTGCTGCAACCGTTGCTCGACTTCGCTAACCGGACGGGCTCTTTCGTATTCCTCGACATCTACCCGTTCTTTGCCTGGAGCGCGAACCCGGCCAACGTGTCTCTGGACTACGCCACGTTGAGCCTGGACCACAACACGGCGGAATTCCAAGATGCCGGGCTCAGCTACTCCAACATGCTGGACGCCCAGCTGGACGCCGTGCTGGCAGCCATGGACCGCCTCGGGTTCCCCAGCGTTAACGTGGTCATTGGCGAGACAGGGTGGCCCACAAAAGGCGACGACAATCAGCCCGGTACCAATGTCCCGAACGCCACGCTGTACAACCAGCAGCTCGTACAGAAGGCCCTCGCCGACCCGCCACGGGGGACACCTCGGCGCCCCGGTGCCTTCATCCCCACCTACATTTTCTCCCTCTTTAACGAGGACCAGAAACCTGGCCCCACCACAGAGCGCAACTGGGGTCTCTTTTACCCCAATGGGACACCCGTTTACCCCATCGTTCTCTCCAATGACGCCCCTGTCCTTTCTCACATCTCCGTTCCCTCTCAGAACAACGCCCCGTTTCCGTCGACCCCTCCTGGCCCCGTTGCTGTTGCTCAGTGGTGCGTTGTCTCACCCGTTGCCGTGGCTCAACAGGACGAAACTAGCCTGCAAGCTGCACTGGATTATGCCTGTGGCGCCGGAGCCGATTGTTCGCTTATCGAGCCCGGGGAGCCCTGTTATCTCCCTAACACCCTTGTTTCCCATGCTTCCTACGCTTTTAACAGTTACTGGCAGAGGAACAAGGCCGCGGGCGCTACCTGTGACTTCAATGGATCTGCGGTGCTCTCCTCCTCTGATCCAAGTGTCGGAGATTGTGTGTTCGATCATATGTAG___AAGATAAAAGTGAGAAAACTGACAGACTTTGTACGAATAGGCGGGGGCAGATCAGGCTGTTTTTACTGTTATTTCATAACGATAGAATCAATTTATATACTAAATAGTTCGTCTACTGTGAAATGATAATGTTGTATATACATTACGTATACACTATGGTGAAAGTATTTGCAATTTTTGTTAGGTGGAATCCAATAAACTCTATGATATTGGGTACCTGATCTATTTGAATTGTAGGATTTCTATAGATAATGTAAAGCCGTGGGCTCTGTTTTGATGGCTAACGGATTAGTATTTGTCTTGTGAATTGGGGTGAGTCCCTCTCGGCCAGTTGAGATGAAAAGCATGAAGCAGGCAAGGTGTGAAACGATGAAATTTCACATTATTGGGATCGAAATAGAAAGCCATAACCGTGGTATATACATTTTGCTATACTATATATACATTAGATATATAGTTTAAAAG

Fln Alignment:

Contig8853___AMANIHASLLLTLRSFADSIKVTTSLAMDVLSSSYPPSAGTFRSDVASPVLQPLLDFANRTGSFVFLDIYPFFAWSANPANVSLDYATLSLDHNTAEFQDAGLSYSNMLDAQLDAVLAAMDRLGFPSVNVVIGETGWPTKGDDNQPGTNVPNATLYNQQLVQKALADPPRGTPRRPGAFIPTYIFSLFNEDQKPGPTTERNWGLFYPNGTPVYPIVLSNDAPVLSHISVPSQNNAPFPSTPPGPVAVAQWCVVSPVAVAQQDETSLQAALDYACGAGADCSLIEPGEPCYLPNTLVSHASYAFNSYWQRNKAAGATCDFNGSAVLSSSDPSVGDCVFDHM
B8LKM5______________AMPNIHASLLN--HGLADSIKVTTSLAMDVLSSSYPPSEGTFRNDVASPVLQPLLDFVNRTGSFVFLDIYPFFAWSANPANVTLDYATFSLDRTAAEFDDAGLSYSNMLDAQLDAVLAAMGRLGFPGVNVVVGETGWPTKGDENQQGTNVPNATRYNQQLVQKVLADPPRGTPRRPGAFIPTFIFSLFNEDQKPGPNTERNWGLFYPDGTPVYPIVLSNDAPALSHISVPSQNNGPLPASPPSPVS-PQWCVVSPVAVAQVDETSLQAALDYACGAGADCSLIEPGEPCYLPNTLVSHASYAFNSYWQKTKAADATCDFHGAAVLTSSDPSVGDCVFDHM

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
711		80		20	0.995493
1109	85		14		0.993533
1186	12		87		0.992554
1190	87		12		0.992554
1191	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain