SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8811

Length: 1076 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8811

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tetratricopeptide repeat domain protein n=2 Tax=Arabidopsis RepID=F4JKH6_ARATH	-	-	83%
FL-Next	tr=Eukaryotic translation initiation factor 3 subunit, putative; Ricinus communis (Castor bean).	-	-	85%
Blast2go	protein kiaa0664 homolog	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	89%
Blast2go	translational initiation	GO:0006413	Biological Process	89%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	89%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Citrate synthase-like	IPR002020	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Nitrogen regulatory protein PII	IPR002187	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	-
Sma3	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SQW7

Fln msg: Distance to subject end: 667 aas, your sequence is shorter than subject: 358 - 1888

Fln protein: GLCHKVGLELAPRDYDMDSANPFKKVDIISMVPVYKQVACSSADGRTLLESSKTALDKGKLDDAVNYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNIHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGPEDLRTQDAAAWLEYFDSKALEQQEAARNGTPKPDASIASKGHLSVSDLLDYIIPSAEVKDKKKQNRTKLRGKLVQSEWDAPMDELTIDINLSPTNNDGKQSPEPEEKGE

Protein Length: 359

Fln nts: GGGGCTTTGCCATAAGGTGGGACTCGAGTTGGCTCCTAGAGATTATGACATGGACAGCGCAAACCCATTCAAGAAAGTAGACATTATCAGCATGGTTCCAGTGTACAAGCAAGTTGCATGCTCATCTGCAGATGGCCGAACCTTGTTAGAATCATCAAAAACTGCTCTGGACAAGGGGAAACTTGATGACGCTGTTAACTATGGGACCAAGGCTCTAGCAAAGCTGGTGGCAGTGTGTGGTCCTTACCATCGAATGACAGCTGGAGCATATAGCTTGTTAGCTGTTGTATTGTATCATACAGGAGATTTCAATCAGGCAACAATTTATCAACAAAAGGCTTTGGATATCAACGAGAGAGAACTAGGTCTCGACCACCCCGATACCATGAAAAGTTATGGCGACCTTGCTGTATTCTATTATCGGCTTCAGCACACCGAATTGGCTCTAAAATATGTCAACCGTGCATTGTATCTTTTGCACCTGACTTGCGGACCATCACACCCAAACACTGCTGCAACATACATTAATGTCGCTATGATGGAAGAAGGCCTGGGAAATATACATGTAGCTCTCAGGTATCTGCATGAGGCCCTAAAATGCAATCAAAGGCTACTTGGAGCAGATCATATACAGACTGCTGCTAGCTATCATGCAATAGCTATTGCTCTTTCATTGATGGAAGCATACTCTTTAAGTGTTCAACATGAGCAGACGACTTTACAAATTTTACAGGCCAAACTTGGTCCAGAGGATCTACGTACACAGGATGCTGCTGCCTGGCTCGAGTATTTTGACTCAAAGGCCTTGGAGCAACAGGAGGCTGCACGTAATGGTACCCCAAAGCCAGATGCATCCATAGCAAGCAAAGGTCATCTCAGTGTATCAGATCTATTAGACTACATAATCCCAAGTGCAGAGGTCAAAGACAAAAAGAAACAAAATCGTACCAAGTTAAGAGGTAAACTTGTCCAAAGTGAATGGGATGCACCTATGGATGAGTTAACAATAGATATCAACTTGTCCCCAACTAACAATGATGGAAAACAGTCTCCAGAACCAGAAGAGAAAGGGGAAT

Fln Alignment:

Contig8811___GLCHKVGLELAPRDYDMDSANPFKKVDIISMVPVYKQVACSSADGRTLLESSKTALDKGKLDDAVNYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNIHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGPEDLRTQDAAAWLEYFDSKALEQQEAARNGTPKPDASIASKGHLSVSDLLDYIIPSAEVK--DKKKQNRTKLRGKLVQSEWDAPMDELTIDINLSPTNNDGKQSPEPEEKGE
B9SQW7______________GLSHKVGLELLPRDYDMDTAYPFRKSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGTKALSKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPDADMKAREAQKKARAKVKGKPGQN-WETVSDEAQKDETLSPTLTVAENSSDKENKSE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
408	20		80		0.995493
409	20	80			0.995493
657	83			16	0.994512
659	83			16	0.994512
872		20		80	0.995493
875		20		80	0.995493
876	20	80			0.995493
878		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain