SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8798

Length: 1441 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8798

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	C2H2-like zinc finger protein [Arabidopsis thaliana] gb\|AAL36315.1\| unknown protein [Arabidopsis thaliana] gb\|AAM61245.1\| zinc finger-like protein [Arabidopsis thaliana] gb\|AAM91787.1\| unknown protein [Arabidopsis thaliana] gb\|AED97727.1\| C2H2-like zinc f	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	zinc finger family expressed	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	75%
Blast2go	intracellular	GO:0005622	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	FAR1 DNA binding domain	IPR004330	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABJ7

Fln msg:

Fln protein: MEKHLSTNFAALAVKVGLLCVVFLYIIPVRGLGQELEEFATLREQDSVVHSHETHCSRERSRTAWKIIEEYLMPFAEEENYNISRTCRLHPENDMFREQELHKDHLQVNEWQCGFCRKIFISEKLLDQHFDNRHHNLLNISRSRCLADICGALHCDVMDKSKPLKTKCNPAAADKNRHLCESLANSCFPPKESPSARRLHDFFLRQFCDAHTCKRGSQPFARGSGKTTNLLYYAICILLMMFLPIFYCIVYVHQREMSKNIKNFKRIPKMNQKTKSY*

Protein Length: 279

Fln nts: CGTCGTGTCCTGTTTGTCGGTTGGCTAAAGATCCAACAGGCCATTCGCCGGGATTCTCTGCTACCTCGCGCTCTCTCTATCCAGATCAAGTTCGTCGTGTAAGTGCGTTGGATTGAAGAAATTCATCGAACACCCTCGAGATCATAAACCCAAAATCAAAACCAGGGCATTTGAAATGCTCAGCGGCGTGTAACGTTATTTTACCAATCAAAATCGATAGGATGCTCCTTCCTCGATGTTCAAATAAACGAGGTCTCTAGGGCAAGCAAAGAA_-_ATGGAGAAACACTTGAGTACGAATTTTGCAGCGTTGGCTGTAAAAGTTGGACTGCTCTGTGTTGTTTTTTTGTATATTATCCCAGTGAGAGGCCTTGGACAGGAACTGGAAGAGTTTGCGACTCTAAGAGAACAGGACAGTGTTGTACATTCACATGAAACACATTGTTCTAGGGAAAGAAGCAGGACTGCTTGGAAAATAATTGAGGAGTATTTGATGCCATTCGCGGAAGAAGAGAATTACAATATCTCAAGAACATGCAGGCTTCACCCCGAGAATGATATGTTCAGAGAGCAGGAGCTACATAAGGATCATCTACAAGTTAATGAATGGCAGTGTGGCTTTTGTAGGAAAATATTTATTTCAGAGAAGTTGCTTGACCAACATTTTGATAATCGTCATCATAACTTGTTGAACATTAGCCGGAGTAGATGTTTGGCAGATATATGTGGTGCATTACATTGTGATGTTATGGATAAGTCCAAGCCGCTAAAGACAAAATGCAATCCTGCTGCTGCTGACAAGAATCGCCATCTTTGTGAGAGTCTTGCAAATAGTTGCTTTCCTCCTAAGGAAAGTCCTTCTGCAAGGCGCCTTCATGACTTCTTTTTACGGCAATTTTGTGATGCCCATACTTGCAAACGAGGCAGTCAACCATTTGCAAGGGGCAGCGGGAAGACAACAAATTTGTTGTACTATGCTATTTGCATCTTGTTGATGATGTTTCTTCCTATATTTTACTGTATAGTTTATGTCCATCAAAGGGAAATGAGCAAGAATATCAAAAATTTCAAACGCATACCTAAAATGAATCAAAAGACGAAATCCTACTGA___GATTGTTTTGGATTTTCTACAGGTTTCCAAGATAAATTTGATCGGTATTTCTTCTCGCATTTTTAAGTGTCTGCGGGTTTATTTTGGTTAGTTTATTTACTTTCTAATAAAGCATATGAACATTGAGGAGGTTAGAAAGTGGTTTGATGTCTCCCATACAGCTATTGCTCCATTATCGTGTACAGTTACAATTGGAGATCGGTTAAAGAGCACTGCGAAAGGATTTCATGTGATCTGGTGTCTCTTTGTTTAATGTGGCTACTATTACATGCTTCGTAGGAGAGCCGTTATTGTGTCATATTTATTATATAATGTAAATGTTCTTATTGTTTAC

Fln Alignment:

Contig8798___MEKHLSTNFAALAVKVGLLCVVFLYIIPVRGLGQELEEFATLR-EQDSVVHSHETHCSRERSRTAWKIIEEYLMPFAEEENYNISRTCRLHPENDMFREQELHKDHLQVNEWQCGFCRKIFISEKLLDQHFDNRHHNLLNISRSRCLADICGALHCDVMDKSKPLKTKCNPAAADKNRHLCESLANSCFPPKESPSARRLHDFFLRQFCDAHTCKRGSQPFARGSGKTTNLLYYAICILLMMFLPIFYCIVYVHQREMSKNIKNFKRIPKMNQKTKSY
D5ABJ7______________MEKQLSTSFAAVALEIGLLCVVFLCIIPVGGLAQELQEFAAVRAQQDSVVHSYETHCSRERSRTAWKIIEEYLMPFVEQENYNISRTCRLHLEIDMFREQEPHKDHLQVNEWQCGFCRKIFISEKLLDQHFDNRHHNLLNISRSRCLADMCGALHCDAMDKSKPIKTKCNPAAADKNCHLCESLANSCFPPQESPSARRLHDFFLRQFCDAHTCKRGSQPFARGSGKTTNLLYYAVCLLLMMMLPIFYCIVYVHQREMGKHIKNFKRIPKMNQK-KSY

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
91	75			25	0.996473
93			25	75	0.996473
94			25	75	0.996473
95		75	25		0.996473
239		20		80	0.995493
332		80	20		0.995493
383		16	83		0.999991
399		83	16		0.999991
763		63		36	1.0
1040		16	83		0.994512
1042	83			16	0.994512
1043	83	16			0.994512
1044	83		16		0.994512
1048		16	83		0.994512
1050	80			20	0.995493
1051	80			20	0.995493
1053	80		20		0.995493
1054	80	20			0.995493
1056	80		20		0.995493
1060	80			20	0.995493
1061	80	20			0.995493
1093	83	16			0.994512
1095	83			16	0.994512
1098	83			16	0.994512
1099	83		16		0.994512
1101		16		83	0.994512
1103		83		16	0.994512
1105	83		16		0.994512
1109	83			16	0.994512
1110		16	83		0.994512
1113	16			83	0.994512
1114	16		83		0.994512
1115			16	83	0.994512
1168	83			16	0.994512
1170	16			83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
782	793	CTG CTG CTG CTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain