SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8790

Length: 1860 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8790

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Synaptosomal associated protein, putative n=1 Tax=Ricinus communis RepID=B9RLS5_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	snap25 homologous protein snap33	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cellular membrane fusion	GO:0006944	Biological Process	79%
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	79%
Blast2go	response to mechanical stimulus	GO:0009612	Biological Process	79%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	79%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	79%
Blast2go	response to other organism	GO:0051707	Biological Process	79%
Blast2go	SNAP receptor activity	GO:0005484	Molecular Function	79%
Blast2go	cell plate	GO:0009504	Cellular Component	79%
Blast2go	integral to membrane of membrane fraction	GO:0000299	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ80

Fln msg:

Fln protein: MARRNDVSSQNPFDSGDEEAKQPRTSASRAKKYSNPFDDDGHGISGSSPANMTKTSQEKNYTNPFDDGHGVSASSPAKKPVAKAVRFKSSKTRMEIPEVQTRNTFSGGEEEAEPASRNKNNPRDSKSIFNENTDHSYEGLSENKGENFISHVKQRAVSVGESAVRTAGKVKETGAHQARKIRIRKSGGSSSTDTGKEIPNSSFSSFDSPVNVIPNSSSQDRKELLSGFEENITSSASSSSLVRKNYKNDYKNDFRDNGGFENQSVQELESYAVFKSEETTTTVNNCLKLAENIKDDATKTLITLHQQGEQITRTHNVATELDYNLKAGEKLLGNLGGIFSRKWKPERSRAITGPVLTRDDSFKRRGKHMEQRAALGLVKSPKGRSSSRTYPLVADTPQAHIEVEKAKQDDALLDLSNVLDQLKEMAVDMGSEIERQNHALDPLADDVTELSFRVKGANARGRRLLGK*

Protein Length: 469

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTTGCAGGACAACTTCTTGGAAATTTAAAGAGTGGACCATGTCCATGGTCTCTGCTCAAACCCTTATATCTGGATTTCTCTCTTCTCCATTTTGCGTGATCGATTGATTGAATTTCTCTCTGCTTCGCCCGATTTATTGATTGAATTAATTTCAGTTCCAGGTAAGGTCAGAGATTTCTGATAGATTAAATCA_-_ATGGCGAGAAGAAATGATGTCAGCTCTCAAAATCCCTTCGATTCAGGCGACGAGGAGGCCAAGCAACCTCGGACTTCAGCCTCACGGGCGAAAAAATACTCGAACCCTTTCGACGACGATGGCCATGGGATTTCGGGTTCGAGTCCTGCCAATATGACTAAGACATCGCAGGAGAAAAATTACACGAATCCTTTCGACGATGGCCATGGGGTTTCGGCTTCGAGTCCCGCGAAGAAGCCGGTCGCCAAAGCAGTGCGGTTTAAATCCAGCAAGACACGGATGGAAATCCCTGAAGTTCAGACCCGCAATACGTTTAGCGGGGGCGAGGAGGAAGCCGAGCCTGCGTCTCGTAATAAGAACAATCCCAGGGACTCGAAATCAATATTTAATGAAAATACTGACCATTCTTATGAGGGTTTGAGCGAAAATAAAGGTGAGAATTTTATCTCCCACGTGAAACAGCGGGCTGTTTCTGTGGGCGAGTCGGCCGTGAGAACTGCGGGAAAAGTGAAGGAAACGGGCGCTCATCAGGCCCGCAAGATCCGAATCAGGAAATCCGGGGGCTCCTCATCAACTGATACTGGTAAGGAGATCCCCAATTCGAGCTTTTCATCATTTGATAGCCCTGTCAATGTGATCCCTAATTCGAGTTCTCAAGACAGAAAAGAACTGTTATCAGGGTTTGAAGAGAACATTACTTCTTCTGCCTCTTCGTCTTCATTAGTGCGCAAGAATTATAAGAACGATTATAAGAACGATTTCCGGGACAACGGAGGGTTTGAGAATCAATCGGTCCAGGAATTGGAGAGCTACGCCGTTTTCAAGTCTGAGGAGACCACTACGACGGTCAATAATTGTCTGAAACTTGCTGAGAATATTAAGGATGATGCTACCAAGACGTTGATCACGCTGCATCAGCAGGGTGAGCAGATTACACGAACACATAATGTGGCAACCGAACTTGATTACAACCTCAAAGCTGGTGAAAAGCTTCTTGGTAACTTGGGTGGTATTTTTTCAAGAAAATGGAAACCTGAAAGGTCTCGTGCAATAACGGGTCCTGTACTTACGCGAGATGATTCTTTCAAAAGAAGAGGAAAACACATGGAACAGAGAGCAGCATTAGGGCTTGTCAAGAGCCCAAAGGGTAGATCATCTTCCAGAACTTACCCTTTGGTTGCAGATACACCTCAAGCTCATATAGAGGTAGAAAAAGCAAAGCAGGATGATGCTCTATTGGATTTGAGTAATGTACTTGACCAATTGAAGGAAATGGCTGTAGACATGGGGAGTGAGATAGAAAGGCAAAATCATGCTCTAGATCCTCTTGCTGATGATGTCACAGAGCTGAGCTTCCGTGTCAAAGGAGCCAATGCACGTGGTCGTCGCTTGCTTGGAAAATGA___CCACACTACTTGATGGATGCAGTGTTGTGTTTTCTTTTGATTCTAATGGACAATATGGTTGCCAGCTCTAGACCTCATCTATGTGTGAGATGTGTTTTTTCCAAGGATGCTACACAAGCATCTAAGCTTGGTTGTTGCAGTGTGTAGAAGGCATTGGGCTTACAAGATATGTACACAGAAGTTATCGTAGTGCAAAAGTCCAGGCATAAGAGTCTTCTTAAGGAGCTCTACTGTTC

Fln Alignment:

Contig8790___MARRNDVSSQNPFDSGDEEAKQPRTSASRAKKYSNPFDDDGHGISGSSPANMTKTSQEKNYTNPFDDGHGXXXXXXXXXXXXXXXRFKSSKTRMEIPEVQTRNTFSGGEEEAEPASRNKNNPRDSKSIFNENTDHSYEGLSENKGENFISHVKQRAVSVGESAVRTAGKVKETGAHQARKIRIRKXXXXXXTDTGKEIPNSSFSSFDSPVNVIPNSSSQDRKELLSGFEENITXXXXXXXLVRKNYKNDYKNDFRDNGGFENQSVQELESYAVFKSEETTTTVNNCLKLAENIKDDATKTLITLHQQGEQITRTHNVATELDYNLKAGEKLLGNLGGIFSRKWKPERSRAITGPVLTRDDSFKRRGKHMEQRAALGLVKSPKGRSSSRTYPLVADTPQAHIEVEKAKQDDALLDLSNVLDQLKEMAVDMGSEIERQNHALDPLADDVTELSFRVKGANARGRRLLGK
B8LQ80______________MARRNGIGSHNPFDSDDEEANRHRTSTSREKKYSNPFDEDGHGVSGSSPAKTTSTSLEKKYTNPFDDGRGVSGSSPAKKPVAKQVQFQSSRRRVEIPDVQTRNPFSGGEEEDEPAAGKNNNPRDSKSRLNEDTGHSYEGLSANKGENFISNVKQRAASVGESAVRTAEKVKETGAHQARKIRIRKSGGSSSSNSGKGIPNSSSSSFDNSINVLPNSSSQERKELLSGFEVKDTSSSSSS-LMRKSYKND----FRDSGGFDNQSVQELESYAVYKSEETTTTVNNCLKLAENIKEDATKTLITLHQQGEQITRTHNVAADIDYNLKAGEKLLGNLGGIFSRKWKPERTRAITGPVLTRDDSFKRRGKHMEQRAALGLVKSPKGRSSSRTYPLVADTPQVRIEVEKTKQDDALLDLSNVLDQLKEMAVDMGSEIERQNHALDPLADDVTELGYRVKGANARGRRLLGK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
531	83	16			0.999991
1799		33	66		0.997452
1801		66		33	0.997452
1802	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain