SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8778

Length: 686 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8778 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine carboxyl methyltransferase [Arabidopsis thaliana] gb\|AED94857.1\| Leucine carboxyl methyltransferase [Arabidopsis thaliana]	-	-	5.0e-30	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	55%
Blast2go	leucine carboxyl methyltransferase	-	-	1.54143e-44	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	1.54143e-44	67%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.54143e-44	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.54143e-44	67%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3		IPR003455	-	-
Sma3	Leucine carboxyl methyltransferase	IPR007213	-	-
Sma3	S-adenosyl-L-methionine-dependent methyltransferase, putative	IPR011610	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
376		14		78	0.999974
436		10	90		0.90298
437	90	10			0.90298
438	90	10			0.90298
505			88	11	0.923564
507		11	88		0.923564
510		88	11		0.923564
511	87	12			0.992554
513	87		12		0.992554
514	87		12		0.992554
516	62	12			1.0
518	12	87			0.992554
565	83		16		0.994512
601	33	66			1.0
602		33		66	1.0
603		33		66	1.0
604	66	33			0.997452
605	33		66		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain