SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8772

Length: 471 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8772 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	radical SAM domain-containing protein [Arabidopsis thaliana] gb\|AAO41968.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50541.1\| unknown protein [Arabidopsis thaliana] gb\|AEE76269.1\| radical SAM domain-containing protein [Arabidopsis thaliana]	-	-	5.0e-29	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	ribosomal rna large subunit methyltransferase n	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	RNA methylation	GO:0001510	Biological Process	79%
Blast2go	rRNA processing	GO:0006364	Biological Process	79%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	79%
Blast2go	RNA methyltransferase activity	GO:0008173	Molecular Function	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal RNA large subunit methyltransferase RlmN;	IPR004383	-	0.0	-
Sma3	Radical SAM	IPR007197	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
57	33	66			0.997452
60		66	33		0.997452
76	20	80			0.995493
79	80		20		0.995493
80			80	20	0.995493
81	20	80			0.995493
277			11	88	0.923564
278	88		11		0.923564
279	88			11	0.923564
280		11		88	0.923564
281	11			88	0.923564
283			11	88	0.923564
284	87			12	0.992554
285		87	12		0.992554
286	87		12		0.992554
288			14	85	0.993533
290			14	85	0.993533
291	12	87			0.992554
293	12			87	0.992554
294			12	87	0.992554
297		12		87	0.992554
300	12			87	0.992554
301			12	87	0.992554
306			12	87	0.992554
308		12		87	0.992554
309	87		12		0.992554
321	71	28			1.0
322		71		28	1.0
324		28		71	1.0
330		71	28		1.0
331			28	71	1.0
332	28	71			1.0
335	28	71			1.0
336	28			71	1.0
339		83	16		0.994512
340	83		16		0.994512
341	83			16	0.994512
342		83	16		0.994512
343	16			83	0.994512
344			16	83	0.994512
346		83	16		0.994512
347	16	83			0.994512
348		16		83	0.994512
350	80		20		0.995493
352	80	20			0.995493
355			20	80	0.995493
360	20			80	0.995493
361		20		80	0.995493
363	20			80	0.995493
364		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain