SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8747

Length: 1632 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8747 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	f-box family protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat acclimation	GO:0010286	Biological Process	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D5

Fln msg: your sequence is shorter than subject: 321 - 348

Fln protein: RRDLGCHSNALVPQVENVVVKVDCVISGEDGGGLNVKGKGILTHLLRFVVGSIVKPLQALHHLIVNPKKVAAVAALDEVSHHSPSEVLRNFKEIQKLRIELPGGELGIEDGVLLKWKAEFGSTLESCVILGASAIIKNGKETSVKPSGTCSSSDETLSHAGDESGSIPESFYTNGGLKLRVVWTISSLIAASARHFLLQQIISDHPTLQSLVLTDSDAQGVLCMGKNQLQELRDKPLAASASSNRTQVPALNMKLWYAPYLELPGGMALKGATLVAIRPSDQPVRKESDAFVAGAFDEPFKTAASLLVRRRTYLLEMNSF*

Protein Length: 322

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGCTCTGGTGCCGCAGGTGGAAAACGTGGTGGTGAAGGTCGATTGCGTCATATCGGGTGAAGATGGCGGCGGCCTTAATGTGAAGGGGAAGGGAATACTCACCCACCTGTTGCGCTTCGTTGTGGGCAGCATCGTGAAACCCTTGCAGGCGCTGCATCATCTTATTGTGAATCCCAAGAAGGTGGCGGCGGTGGCGGCTCTGGATGAGGTTTCTCATCATTCGCCCAGCGAGGTTCTGAGGAATTTTAAGGAGATTCAGAAGCTTCGGATTGAGTTGCCTGGGGGCGAACTCGGGATCGAAGACGGGGTTTTGCTCAAGTGGAAGGCCGAATTCGGGAGCACTTTAGAAAGCTGCGTTATTCTCGGCGCTTCTGCTATTATAAAAAATGGCAAGGAAACCTCTGTTAAACCCTCGGGGACCTGTTCTTCAAGTGACGAAACCCTTTCCCATGCAGGGGATGAGAGTGGGAGTATTCCCGAGTCTTTTTACACCAACGGGGGTTTGAAGCTTAGGGTTGTGTGGACTATCAGTTCCCTGATAGCCGCATCTGCCAGGCACTTTCTTTTACAGCAGATAATTTCAGATCACCCTACCTTGCAGAGCCTCGTTCTCACCGATTCTGATGCCCAGGGGGTTCTCTGTATGGGCAAAAATCAGTTACAGGAGCTTCGCGATAAACCCCTTGCGGCTTCGGCTTCTTCAAACCGGACCCAGGTCCCTGCCCTCAACATGAAATTGTGGTACGCTCCTTATCTTGAGCTTCCCGGTGGCATGGCTTTGAAGGGCGCAACTCTCGTTGCGATTCGACCCAGTGACCAGCCGGTGCGAAAAGAAAGCGATGCATTTGTTGCCGGTGCTTTCGACGAGCCTTTCAAGACCGCGGCTAGCCTTCTCGTCCGAAGACGAACTTATCTCCTTGAGATGAATTCCTTCTAA___GGCTCCAGAAACTCTATGAGGGTTTTAACTGATATTAACAGGGTCTCTGTATTAAAGTTATTGTTATTTACATTCTCATTCAAGAAAAACATCCTTGATGACCTATAATGTATCATCAGAGGGAGATCATGGATTTATGGAACTGTATAGATCGGAGATATACTGATTTTACTGATACCTAGAATCGAAACTAAAGATCAAGGTAACGACAATACATTGTAAGCAGACTCTGCTGTAGTACCAAGTTTCTTGCTGAGGGAAAGGGTTCACGATGAGCTGGTTTGATTTAAGGATGATCTTGCCAGTTCAGGGCTTTGTACTTGTGGAAACAGATACTGCTGTAAACCGGGATGCTTGAACCGAGTATTTGGCAGCTGGTGGATTTTGGAAGTCAGCGTCTCATACATTACAAATAATTACAAAAATATGATGGTACATCTCATGAAACAAGGTTCTGTGTTCAACTCGTTTCGAGTTCGCAATGTTAAGCACTATGTATTGACATTCTCATGAAACGAGGTTCTGTGTTCAACTCGTTTCGAGTTCGCAATGTTAAGCACTATGCATGGACATCCTCTTTAGCATCGGATGGCTCTCTTAACAATAGCTTTCAGAAATCTAGAGCGTGTTGTAATCTGAAACATTAAAAAAAATTGTAGTTGTAATTCC

Fln Alignment:

Contig8747___NALVPQVENVVVKVDCVISGEDGGGLNVKGKGILTHLLRFVVGSIVKPLQALHHLIVNPKKVAAVAALDEVSHHSPSEVLRNFKEIQKLRIELPGGELGIEDGVLLKWKAEFGSTLESCVILGASAIIKNGKETSVKPSGTCSSSDETLSHAG--DESGSIPESFYTNGGLKLRVVWTISSLIAASARHFLLQQIISDHPTLQSLVLTDSDAQGVLCMGKNQLQELRDKPLAASASSNRTQVPALNMKLWYAPYLELPGGMALKGATLVAIRPSDQPV--RKESDAFVAGAFDEPFKTAASLLVRRRTYLLEMNSF
D5A9D5______________NFLVPQVENVVVKVDCVISGEDGG-LNAKGKGIIGHLVRFMIGSIVKPLQALQHFI-GPRK----AILAEVSHHSPAEVLKNFKEIQHLRIELPGGELGVEDGVLLKWKAEFGSTLESCVIFGAASVLSKGLKTGSRRKIQLVSDDEPEGLEGLEDDNGSIPDSFYINSWLKLRVVWTISSLIAASARHFLLKEIIHDHPTLQNLVLTDADGQGTLCMGREQLCEFRDKPLAASPSSNRTQVPALNMKLRYAPTLELPSGTVMQGATLVTIRPSDQTIAAKKESEGFIVGAFEGPYRAAAKILSRRRTYLLEMNSF

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
692	25		75		0.996473
744	75	25			0.996473
746		25		75	0.996473
747	75		25		0.996473
784			25	75	0.996473
800	75		25		0.996473
848	33		66		0.997452
849	33		66		0.997452
919		33		66	0.997452
933	66	33			0.997452
955		71		28	1.0
974		30		69	1.0
978			69	30	1.0
994		84		15	0.999986
995		84	15		0.999986
996	15	84			0.999986
997			15	84	0.999986
998			76	23	1.0
1000	15		84		0.999986
1003	7	15		76	0.999983
1006	30		69		1.0
1007	76	7	15		0.999983
1008	76	7	15		0.999983
1011	30		69		1.0
1013		15		84	0.999986
1030	90	10			0.90298
1031	90	10			0.90298
1036	25		75		1.0
1043		75		25	1.0
1044	25			75	1.0
1056		77		22	0.999999
1082		77		22	0.999999
1105		75	25		1.0
1200	87		12		0.992554
1321		83		16	0.994512
1324	14			85	0.993533
1325		85	14		0.993533
1327			14	85	0.993533
1328	14	85			0.993533
1329		14	85		0.993533
1331			14	85	0.993533
1334	14	85			0.993533
1338			14	85	0.993533
1341	14		85		0.993533
1343		85	14		0.993533
1344	14	85			0.993533
1346		71	14		0.984337
1444	50	50			1.0
1503		50		50	1.0
1512		33	66		1.0
1542	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain