SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8647

Length: 2077 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene8647
CATGGGGAAGCAAGCTTCGGCATTGTGAATAGCAGGAGAGGCACAGGGGAAGTATCAGGCTACATCATTTGAATTGCGAGTGGATTTGTAATAAATGGGTGCTCAGCTATCTAAGGATGAGCTCCTATATACAGAAGTCATGAATGGGAACCAGGAGAAGGTCAAAGCTCTCCGTCGTGCTGGGGCAAGCTTGGAGTGGATGGATAAGGAAGGAAGAACCCCTCTTATTCTTGCTTGTACAAGAGGCGATTTACTGGAAATGGCCATAACATTAATCAGTTTGGGTGCCAATATACATTCATACAAACCTGGGGCTCATGGAGGAACTCCTTTACATCATGCTGCCAAACGTGGCCTTGACAAAACTGTGAAAATGCTTCTTTCTCATGGAGCGAATCCTTTGACAATCAATGATGATTGCCAGACACCTCTTGACATGGCAAGAAGTAAGGACCAAGTCACCGTGGTTCGGATAATTGAGGGATGGATTTCTCTCTTTTCTGGTATGATTCGGGAACTTTCTGGACCTGGCTTCTTGGAAGCATTAGCACCTCAGTGGCTATCAAAAAAAATCTGGGCCGTGGTGTTACCTTCCATATCACACAATCCAAGGAGGCCTCCAAAATTTGAGCTTGCCATTTATCCAACACCAAAGGTTTCTCGACCACGGACAATTATTTCACTATCGAAAGTTGAAATTGAAGAACCCAAGTTTGATTTGCCAGATCCTGTACTGGTACTATTTGACAAGGGTGCAAAGAGTAGATATAAGTTTCTGTCTGAGTTTGAAGGTGACAAACCACAATTGCGTAGATTATATGAAGCCTGCAAAGGGATCCGGATGGCTCAGAATGAAGTGAATGCTCCAGTTGTTTGGGGAGTACCTCCTTTGCAGCCAAACCTACCTGCAACACCACCTGCAAACATGCCTCTCCCGGAGGATGTAGAACTCGCTATGGCAATTGCTGCTTCAATGCAATTTGCATCACAAGAAGGAATTCCTCCTGTATCTGAACAGGCTTCAACAAGTGACTTAAATGGCAGGCCAAATATATCAGGTGGGGTACCTCCTGATAGAACAACGGTGCCATCGATTAATGATAAAACCGGTGGCTGGTCAGGTAAGGTTGGTTCAACTTCTTGCAATGGCTGGGCTGCAGCAGATGAAGCAAAACCGAGCAGCAGCAGCACTGCTGAAACTCTGACAAATGATCCCACAGTTTCTAGCCCATCAGTTTCTGCAAATTCTGTTGCTGTGTCAGCAGCTGCTTGTTCTCCTTCAGCTCCCCCTCTGCCGGCAGAAGAAGTCCTTGGTCCAATTATTTATCCTTCCATTGATTTGTCTCAAATCGAACATGATCTTCCTTCTACTTCAGAGCATGGTACACAGTCCTTAGCAAGTTCAACCAAAGCAGGGGGTGATACTTCTGGCACCTGTGTAATTTGTTGGGATGCTCCACCGGAAGGAGTTTGTATACCTTGTGGCCATCTTGCAGGTTGTATGTCCTGCTTAAATGAGATCAAGGTGAAGAATTGGGGTTGCCCAGTTTGTCGGGCTAGCATTGAACATGTCATCAGAGTATATACTGTATGATTGAGAATCCAAAACTTTGAGATAAAACAAATAAACAAATAACTCAGTAATTATATTTTGAATGGTGCAGGATCTAATGCCAAAAAAAAATGCAGGAATCTCGGATGATATAACCTTCCGTTAGTCTGAATGTATTGTGTACATATTGGTGAATGTTATTTGTTCCTTATTTGATCAAGATGGTCAGAGTACTGCTCTGAGTTCTGAATGTAGTTGGTGACATTACATTATATTTACAGAGTTTTGTATCTTCATCAATTAGAGAGAACCCTACACTGGTCCAGTAACTATTCTCCTTGCCATGAAATAATAGTCATATTTCCTTGCTCAATATATTAACTTTTCCATTTGTATGCATGAGCTAGATCTCATGCAGTTGCTGTAATGATGGCTGAGAATGTACTCTTTTTGAAGGGATTGCATCCTTTTCAGTAACATGAATATCAGATTGTTTTGAGGTAATATTCTGTTAGTGGTTGTCAA

Ace file of the UniGene sp_v2.0_unigene8647

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0666 FOG: Ankyrin repeat	-	-	3.0e-07	31%
FL-Next	sp=Probable E3 ubiquitin-protein ligase XBOS34; Oryza sativa subsp. japonica (Rice).	-	-	0.0	45%
Blast2go	protein	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Recombination protein RecR, conserved site	IPR015967	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q7XI08

Fln msg:

Fln protein: MGAQLSKDELLYTEVMNGNQEKVKALRRAGASLEWMDKEGRTPLILACTRGDLLEMAITLISLGANIHSYKPGAHGGTPLHHAAKRGLDKTVKMLLSHGANPLTINDDCQTPLDMARSKDQVTVVRIIEGWISLFSGMIRELSGPGFLEALAPQWLSKKIWAVVLPSISHNPRRPPKFELAIYPTPKVSRPRTIISLSKVEIEEPKFDLPDPVLVLFDKGAKSRYKFLSEFEGDKPQLRRLYEACKGIRMAQNEVNAPVVWGVPPLQPNLPATPPANMPLPEDVELAMAIAASMQFASQEGIPPVSEQASTSDLNGRPNISGGVPPDRTTVPSINDKTGGWSGKVGSTSCNGWAAADEAKPSSSSTAETLTNDPTVSSPSVSANSVAVSAAACSPSAPPLPAEEVLGPIIYPSIDLSQIEHDLPSTSEHGTQSLASSTKAGGDTSGTCVICWDAPPEGVCIPCGHLAGCMSCLNEIKVKNWGCPVCRASIEHVIRVYTV*

Protein Length: 501

Fln nts: CATGGGGAAGCAAGCTTCGGCATTGTGAATAGCAGGAGAGGCACAGGGGAAGTATCAGGCTACATCATTTGAATTGCGAGTGGATTTGTAATAA_-_ATGGGTGCTCAGCTATCTAAGGATGAGCTCCTATATACAGAAGTCATGAATGGGAACCAGGAGAAGGTCAAAGCTCTCCGTCGTGCTGGGGCAAGCTTGGAGTGGATGGATAAGGAAGGAAGAACCCCTCTTATTCTTGCTTGTACAAGAGGCGATTTACTGGAAATGGCCATAACATTAATCAGTTTGGGTGCCAATATACATTCATACAAACCTGGGGCTCATGGAGGAACTCCTTTACATCATGCTGCCAAACGTGGCCTTGACAAAACTGTGAAAATGCTTCTTTCTCATGGAGCGAATCCTTTGACAATCAATGATGATTGCCAGACACCTCTTGACATGGCAAGAAGTAAGGACCAAGTCACCGTGGTTCGGATAATTGAGGGATGGATTTCTCTCTTTTCTGGTATGATTCGGGAACTTTCTGGACCTGGCTTCTTGGAAGCATTAGCACCTCAGTGGCTATCAAAAAAAATCTGGGCCGTGGTGTTACCTTCCATATCACACAATCCAAGGAGGCCTCCAAAATTTGAGCTTGCCATTTATCCAACACCAAAGGTTTCTCGACCACGGACAATTATTTCACTATCGAAAGTTGAAATTGAAGAACCCAAGTTTGATTTGCCAGATCCTGTACTGGTACTATTTGACAAGGGTGCAAAGAGTAGATATAAGTTTCTGTCTGAGTTTGAAGGTGACAAACCACAATTGCGTAGATTATATGAAGCCTGCAAAGGGATCCGGATGGCTCAGAATGAAGTGAATGCTCCAGTTGTTTGGGGAGTACCTCCTTTGCAGCCAAACCTACCTGCAACACCACCTGCAAACATGCCTCTCCCGGAGGATGTAGAACTCGCTATGGCAATTGCTGCTTCAATGCAATTTGCATCACAAGAAGGAATTCCTCCTGTATCTGAACAGGCTTCAACAAGTGACTTAAATGGCAGGCCAAATATATCAGGTGGGGTACCTCCTGATAGAACAACGGTGCCATCGATTAATGATAAAACCGGTGGCTGGTCAGGTAAGGTTGGTTCAACTTCTTGCAATGGCTGGGCTGCAGCAGATGAAGCAAAACCGAGCAGCAGCAGCACTGCTGAAACTCTGACAAATGATCCCACAGTTTCTAGCCCATCAGTTTCTGCAAATTCTGTTGCTGTGTCAGCAGCTGCTTGTTCTCCTTCAGCTCCCCCTCTGCCGGCAGAAGAAGTCCTTGGTCCAATTATTTATCCTTCCATTGATTTGTCTCAAATCGAACATGATCTTCCTTCTACTTCAGAGCATGGTACACAGTCCTTAGCAAGTTCAACCAAAGCAGGGGGTGATACTTCTGGCACCTGTGTAATTTGTTGGGATGCTCCACCGGAAGGAGTTTGTATACCTTGTGGCCATCTTGCAGGTTGTATGTCCTGCTTAAATGAGATCAAGGTGAAGAATTGGGGTTGCCCAGTTTGTCGGGCTAGCATTGAACATGTCATCAGAGTATATACTGTATGA___TTGAGAATCCAAAACTTTGAGATAAAACAAATAAACAAATAACTCAGTAATTATATTTTGAATGGTGCAGGATCTAATGCCAAAAAAAAATGCAGGAATCTCGGATGATATAACCTTCCGTTAGTCTGAATGTATTGTGTACATATTGGTGAATGTTATTTGTTCCTTATTTGATCAAGATGGTCAGAGTACTGCTCTGAGTTCTGAATGTAGTTGGTGACATTACATTATATTTACAGAGTTTTGTATCTTCATCAATTAGAGAGAACCCTACACTGGTCCAGTAACTATTCTCCTTGCCATGAAATAATAGTCATATTTCCTTGCTCAATATATTAACTTTTCCATTTGTATGCATGAGCTAGATCTCATGCAGTTGCTGTAATGATGGCTGAGAATGTACTCTTTTTGAAGGGATTGCATCCTTTTCAGTAACATGAATATCAGATTGTTTTGAGGTAATATTCTGTTAGTGGTTGTCAA

Fln Alignment:

Contig8647___MGAQLSKDELLYTEVMNGNQEKVKALRRAGASLEWMDKEGRTPLILACTRGDLLEMAITLISLGANIHSYKPGAHGGTPLHHAAKRGLDKTVKMLLSHGANPLTINDDCQTPLDMARSKDQVTVVRIIEGWISLFSGMIRELSGPGFLEALAPQWLSKKIWAVVLPSISHNPRRPPKFELAIYPTPKVSRPRTIISLSKVEIEEPKFDLPDPVLVLFDKGAKSRYKFLSEFEGDKPQLRRLYEACKGIRMAQNEVNA-PVVWGVXXXXXXXXXXXXXXMPLPEDVELAMAIAASMQFASQEGIP---PVSEQASTSDLNGRP--NISGGVPPDRTTVPSINDKTGGWSGKVGSTSC--NGWAAADEAKPSSSSTAETLTNDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEVLGPIIYPSIDLSQIEHDLPSTSEHGT-----------------QSLASSTKAGGDTSGTCVICWDAPPEGVCIPCGHLAGCMSCLNEIKVKNWGCPVCRASIEHVIRVYTV
Q7XI08______________MGLQQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIELGANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVNVVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIYPELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYSACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASILSAIAEGVPDVQPITTTTATNDWGNPPSNSLNGWGPPD-TSAPS---KTSGQVPVVTSSSSTYNGWDVPGTSSGQSSSKHNKSQNSTFVVPQEALPSLPVPTAPPLAVGTFYD------GPIQYPSIDSTPVDVTMPS-ADGGTAVSSAKPAENEGDAKPAESDANASNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
320		85		14	0.993533
325	85		14		0.993533
631	25			75	0.996473
633		25	75		0.996473
637			25	75	0.996473
1108	66		33		0.997452
1354	72	27			1.0
1355	72	27			1.0
1359	18		81		0.999994
1396	90		10		0.90298
1414		75	25		1.0
1532		17	82		1.0
1535		17	82		1.0
1536	82		17		1.0
1537	82			17	1.0
1540	81	18			1.0
1545		18	81		1.0
1548		18		81	1.0
1549	18		81		1.0
1551		81		18	1.0
1909	14			85	0.993533
1910	85			14	0.993533
1920		16		83	0.994512
2008		20		80	0.995493
2056			33	66	0.997452
2057	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1178	1190	AGC AGC AGC AGC A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain