SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8644

Length: 820 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8644

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine protease, putative n=1 Tax=Ricinus communis RepID=B9R816_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	xylem bark cysteine peptidase 3	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	75%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	75%
Blast2go	vacuole	GO:0005773	Cellular Component	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
281	33		66		0.997452
346		75		25	0.996473
409			83	16	0.994512
411			16	83	0.994512
468	33		66		1.0
472			83	16	0.994512
474		16		83	0.994512
517	50		50		1.0
574	75	25			0.996473
575	50	25		25	0.995533
576			75	25	0.996473
577	50		25	25	0.995533
579		75	25		0.996473
580	75	25			0.996473
582			25	75	0.996473
583		75		25	0.996473
586		25	75		0.996473
588		25		75	0.996473
596	20		80		0.995493
597	20		80		0.995493
795		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain