SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8627

Length: 1189 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8627

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zf-UBR domain containing protein	-	-	8.0e-29	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Blast2go	protein	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	66%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	66%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	66%
Blast2go	regulation of lipid catabolic process	GO:0050994	Biological Process	66%
Blast2go	cuticle hydrocarbon biosynthetic process	GO:0006723	Biological Process	66%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	66%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	66%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3		IPR003455	-	-
Sma3	Adaptor protein ClpS, core	IPR003769	-	-
Sma3	S-adenosyl-L-methionine-dependent methyltransferase, putative	IPR011610	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7THN6

Fln msg: Distance to subject end: 27 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 341 - 400

Fln protein: SVVYLRRNLEQLQPGLVTYIKHNRSKLQSVVSALLPGVDEVNGVTSSATIKNQFRESIKWVQLLMFEEPQAVLDELRKQAAGTQGVCGAVWGNNDIAYRCRTCEQDPTCAICVPCFRAGNHVNHDYNMIHTGGGCCDCGDETAWKSEGFCSRHRGPGQVQPLPPKYAKFAEPVLGALLIEWKERLLAAEKVAEGKPKKWDEQKAEEKVAYKTTSVIVEMLLRFCECSESLLNFIATLMCSSQYGLLDILLRTEKFLHKKVVLELHELLFKLLGDPNFKYEFAKAFIRHYPILMSVVTREGADGDNANTRSSDYPILSNFSVQIFTVPTLTRRLVIEVNLLD

Protein Length: 342

Fln nts: TATTGCTAAACAAAGCCATCGCATCGTATTGCATCACGTCTCATCTCTGTGCTTTCTGGGAGCGTTGGTGCGGACTCGATCCGTGGTTGCCAGAGATTAAATGGAAGAGCAGAGTGAATTGTCATCGCCTTCAGAAATGGATCCCATCCGCAAGAGACTT_-_ATGAAGTGTGGTGTACCTAAGGAGAAATTTGGAGCAATTGCAGCCAGGATTGGTGACCTATATTAAACATAATAGGTCAAAGCTACAATCAGTTGTATCTGCCCTTTTACCTGGCGTTGACGAAGTAAATGGAGTAACATCTTCAGCTACAATTAAAAATCAATTTCGTGAAAGTATTAAATGGGTACAATTGTTAATGTTTGAAGAGCCTCAGGCAGTTCTTGATGAACTCAGGAAGCAGGCAGCTGGTACTCAAGGTGTCTGTGGGGCAGTTTGGGGAAACAATGACATTGCATATAGGTGCCGGACATGTGAGCAAGATCCTACCTGTGCTATTTGTGTTCCTTGTTTCAGAGCTGGCAACCATGTCAATCACGATTACAACATGATTCACACAGGTGGTGGTTGTTGTGATTGTGGAGACGAAACAGCATGGAAATCAGAAGGTTTTTGCTCTAGACATAGAGGTCCAGGGCAGGTGCAGCCCCTACCACCAAAATATGCAAAGTTTGCAGAGCCTGTATTGGGGGCCCTTCTAATTGAATGGAAAGAGCGTCTACTAGCTGCAGAAAAAGTGGCCGAAGGCAAGCCAAAGAAATGGGATGAACAAAAAGCAGAGGAAAAGGTTGCTTACAAGACAACTTCTGTAATCGTGGAAATGCTGCTTAGATTTTGTGAATGCAGTGAGAGTTTACTGAATTTTATTGCAACATTGATGTGTTCTTCCCAGTATGGTTTGCTGGATATTCTTCTAAGGACTGAAAAGTTTCTGCATAAGAAAGTAGTGTTAGAGCTCCATGAGTTGCTTTTCAAGTTATTGGGAGATCCAAATTTTAAGTATGAATTTGCAAAGGCTTTTATTAGGCATTATCCGATTCTTATGTCTGTAGTCACACGAGAGGGTGCTGATGGGGATAATGCCAATACAAGGTCTAGTGATTATCCCATATTAAGTAACTTTTCTGTGCAGATTTTCACAGTGCCAACTCTAACACGAAGACTTGTAATTGAAGTAAATCTTTTGGACAT

Fln Alignment:

Contig8627___NLEQLQPGLVTYIKHNRSKLQSVVSALLPGVDEVNGVTS-----------SATIKNQFRESIKWVQLLMFE-EPQAVLDELRKQAAGTQGVCGAVWGNNDIAYRCRTCEQDPTCAICVPCFRAGNHVNHDYNMIHTXXXXXXXXXETAWKSEGFCSRHRGPGQVQPLPPKYAKFAEPVLGALLIEWKERLLAAEKVAEGKPKKWDEQKAEEKVAYKTTSVIVEMLLRFCECSESLLNFIATLMCSSQYGLLDILLRTEKFXXXXXXXXXXXXXXXXXGDPNFKYEFAKAFIRHYPILMSVVTREGADGDNANTRSSDYPILSNFSVQIFTVPTLTRRLVIEVNLL
D7THN6______________HLERLEPGLVAYVKENKFRVPELVSAILPTEEEVLEAYKECKASSKEDLVSPTMTEQFRESMRLLQWLMFYGEPLSALNKLAKISTGQRGVCGSVWGHNDIAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSVIYTGGGCCDCGDVTAWKREGFCSKHKGAEQIQPLPEEFAKSVGPVLDALLVCWKNKLLFAENACQEYHKGSDRIGEFKKVANELTFVVVEMLTEFCQYSESLLSFISKRVFISD-GLLDSLVRAERFLSKRVTRKLHELLLKLLGEPVFKYEFAKVFLSYYPILVNEAIKGCSDSVFKN-----YPLLSTFSVQIFTVPTLTPRLVKEMNLL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
226	75			25	0.996473
227	75			25	0.996473
712	20		80		0.995493
713		20	80		0.995493
715	80			20	0.995493
716	80			20	0.995493
803			50	50	1.0
922			80	20	0.995493
964	80			20	0.995493
1038		80		20	0.995493
1054		20		80	0.995493
1056		20	80		0.995493
1066	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain