SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8585

Length: 555 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene8585
CGTGGTGGGAGTCGCAGAAAACAGCTATTCCCTGTTTTATCATCAGTTTTGGCCCTAGACGTCTGTAGTTCCAATCTCGCAGCGTAAAAGGATCAGGTTTTCTGGAATATATCTATATTATCTGCGATGCCAGGTCCATACATAAGGGCCGCATGGTCTGCGGCCCGCAGGGTTTTACCATCGCCAAAGACAAATCCAAAATATTATAATAGTATATTCGGCCGGACTGGCTCGAGCTCCTGGTTCACCAGGAGAGGCTTCTCTGCGGCCGCCCCAGCCATCGATCATCCGGACAGTGTGGTGGATCCTGCCAAAATTCGAAACGTTGCTGTCATAGCTCATGTCGACCATGGCAAAACTACTCTCATGGACAGATTACTGCGGCAATGCGGTGCAGATATCCCACATGAGCGTGCTCTCGACTCCATCAATTTGGAACGCGAGAGGGGTATAACCATTGCCTCGAAGGTTACTTCAATTCCATGGAAGGGAAATGAGCTAAACATGGTTGATACGCCTGGTCATGCAGATTTTGGAGGCGAGGTAGAGAGGGTT

Ace file of the UniGene sp_v2.0_unigene8585 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative GTP-binding protein [Arabidopsis thaliana]	-	-	2.00386e-43	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	elongation factor-like protein	-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	75%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	75%
Blast2go	GTPase activity	GO:0003924	Molecular Function	75%
Blast2go	GTP binding	GO:0005525	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP-binding protein TypA	IPR006298	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ4

Fln msg: Distance to subject end: 602 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 143 - 785

Fln protein: MPGPYIRAAWSAARRVLPSPKTNPKYYNSIFGRTGSSSWFTRRGFSAAAPAIDHPDSVVDPAKIRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERALDSINLERERGITIASKVTSIPWKGNELNMVDTPGHADFGGEVERV

Protein Length: 144

Fln nts: CGTGGTGGGAGTCGCAGAAAACAGCTATTCCCTGTTTTATCATCAGTTTTGGCCCTAGACGTCTGTAGTTCCAATCTCGCAGCGTAAAAGGATCAGGTTTTCTGGAATATATCTATATTATCTGCG_-_ATGCCAGGTCCATACATAAGGGCCGCATGGTCTGCGGCCCGCAGGGTTTTACCATCGCCAAAGACAAATCCAAAATATTATAATAGTATATTCGGCCGGACTGGCTCGAGCTCCTGGTTCACCAGGAGAGGCTTCTCTGCGGCCGCCCCAGCCATCGATCATCCGGACAGTGTGGTGGATCCTGCCAAAATTCGAAACGTTGCTGTCATAGCTCATGTCGACCATGGCAAAACTACTCTCATGGACAGATTACTGCGGCAATGCGGTGCAGATATCCCACATGAGCGTGCTCTCGACTCCATCAATTTGGAACGCGAGAGGGGTATAACCATTGCCTCGAAGGTTACTTCAATTCCATGGAAGGGAAATGAGCTAAACATGGTTGATACGCCTGGTCATGCAGATTTTGGAGGCGAGGTAGAGAGGGTT

Fln Alignment:

Contig8585___SSSWFTRRGFSAAAPAIDHPDSVVDPAKIRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HE--RALDSINLERERGITIASKVTSIPWKGNELNMVDTPGHADFGGEVER
B8LKZ4______________STSTSVRGRTPIVSMAADGPSREVPLSDYRNIGIMAHIDAGKTTTTERILFYTGKNYKIGEVHDGTATMDWMEQEQERGITITSAATTCAWNNHRINIIDTPGHVDFTLEVER

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
139	50		50		1.0
245			88	11	0.923564
408		87		12	0.992554
516	85	14			0.993533
517		14		85	0.993533
518	85	14			0.993533
520	85			14	0.993533
530	83			16	0.994512
532	16	83			0.994512
536			16	83	0.994512
537	16			83	0.994512
540	16			83	0.994512
543		16	83		0.994512
545	20	80			0.995493
546			20	80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain