SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8550

Length: 929 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8550 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	plastid transcriptionally active 2 [Arabidopsis thaliana] sp\|Q9S7Q2.1\|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; AltName: Full=Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor gb\|AAD55291.1\|	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	transcription from plastid promoter	GO:0042793	Biological Process	65%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	65%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	65%
Blast2go	chloroplast	GO:0009507	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
701	11		88		0.923564
722		11		88	0.923564
723		11	88		0.923564
724	11	88			0.923564
814		87		12	0.992554
816	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain