SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8549

Length: 1900 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8549

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cation-chloride cotransporter 1; Short=OsCCC1; AltName: Full=Potassium-chloride cotransporter 1 dbj\|BAD03666.1\| putative Na+/K+/Cl-cotransport protein [Oryza sativa Japonica Group] gb\|EAZ42309.1\| hypothetical protein OsJ_26882 [Oryza sativa	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	sodium ion transport	GO:0006814	Biological Process	81%
Blast2go	chloride transport	GO:0006821	Biological Process	81%
Blast2go	cation:chloride symporter activity	GO:0015377	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Interleukin-6/G-CSF/MGF	IPR003573	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9L5

Fln msg: Overlapping hits, possible frame ERROR between 1120 and 1119, your sequence is shorter than subject: 434 - 458

Fln protein: RPRWKFHQWSFSLAGAILCLVIMFLISWTFTITSLVLASLIYYYVSIRGKAGDWGDGFKSAYFQLALRSLRSLGGNQVHPKNWYPIPLIFCKPWGILPPDVPCHPKLADFANCMRKKGRGMSIFASILEGNYRDKAEEARQASRLLTKYIDYKNCEGVSEVIIAKNISQGFRGIVQTMGLANLKPNIVCMRYPEIWREGSANNIPDSFVSIINDCAIANKAVVIVKGLDEWPSEYQKQYGTIDLYWIVRDAA*TRLSPKLLRARDSFESCKIQVFCIAEEDMEAEELKADVKKFLYDLRMQAEVIIVTMKSWEAHRQDSEAEMAVREDAMDAFSKSRKRIAAHAEYLRSSNDHKNVQYNEQQVDKFLYTTLKxxNNIILRYSRMAAVVLVSLPPPPPQHPSYFFMEYVDLLVDGIPRLLMVRGYTRDVITIFT*

Protein Length: 435

Fln nts: GCGACCTCGATGGAAGTTCCACCAaTGGAGCTTCTCTcTAGCtgGTGCTaTTCTATGTTTAGTGATAATGTTCCTCATATCCTGGACATTTACAATTACATCTCTGGTACTTGCAAGCTTAATTTACTATTATGTCAGTATACGGGGAAAGGCAGGTGATTGGGGTGATGGTTTCAAGAGTGCTTATTTTCAATTAGCACTGCGCAGTCTTCGTTCTCTTGGAGGGAATCAAGTCCACCCAAAAAACTGGTACCCTATTCCATTGATTTTTTGTAAGCCTTGGGGAATTCTACCACCTGATGTTCCTTGCCATCCAAAGTTGGCTGACTTTGCCAATTGTATGCGGAAAAAGGGACGTGGAATGTCAATTTTTGCATCTATATTGGAGGGTAATTACAGAGACAAAGCTGAGGAAGCTCGACAAGCTAGTCGACTTCTAACCAAATATATTGATTACAAAAATTGTGAAGGAGTGTCTGAAGTTATTATTGCAAAGAACATATCTCAAGGATTTCGAGGTATCGTGCAGACAATGGGTCTTGCTAATCTGAAGCCAAACATAGTTTGCATGAGATATCCTGAAATTTGGAGAGAGGGAAGCGCTAACAATATTCCAGACTCTTTTGTCAGCATTATTAATGACTGCGCTATTGCAAACAAAGCAGTGGTTATAGTCAAAGGATTAGATGAATGGCCTAGTGAATATCAGAAACAGTATGGCACAATCGACCTTTATTGGATAGTTCGGGATGCGGCCTGAACGCGGCTGTCACCCAAGCTACTAAGGGCAAGAGATAGCTTTGAGAGCTGTAAAATTCAGGTATTTTGCATTGCTGAAGAAGACATGGAAGCTGAAGAGCTTAAGGCAGATGTTAAAAAATTTCTTTATGATTTGCGGATGCAAGCTGAGGTGATTATAGTTACGATGAAATCCTGGGAAGCCCACCGGCAGGACAGTGAGGCAGAAATGGCAGTCAGGGAGGATGCCATGGATGCATTTTCAAAATCTAGAAAGCGTATAGCTGCACATGCTGAGTACTTGAGATCCAGCAATGATCACAAGAATGTGCAATACAATGAACAACAAGTGGACAAGTTTCTGTATACCACATTAAAGxxxxxxAATAACATTATTCTGCGATATTCTCGAATGGCAGCTGTGGTCCTTGTCAGCCTCCCACCACCACCTCCGCAGCATCCATCCTATTTCTTTATGGAGTATGTGGATTTGCTTGTTGATGGAATCCCTAGGCTTTTGATGGTCAGAGGGTATACAAGAGATGTGATCACCATTTTCACATAGATTTTGTTTCATACGATATTGCAGGAAAGTATTTTATCTTTCAGCTGGTGCTTAGTGCTCCACTTAACAATCTTGTTTAAGTGCAGTTTTTCCAGATTTCGAACCTTCCGCTATTTGAGCACACGGTAATACTACCTACATTAGATATCATAATATATCCAATACCCTTCCAAGTTGGGGTCATATGGTCTAACTGTTTCCCTCATTTTGGATTTTACAATGTTCAGAAATGTCACGTAATCTGCTTCTCCCTGTTGTTTCATTTATATTCCAGTAATGGCTTTAAGGGCTATATTGTAACGTATTCCAAATTTGCCTTGAAAATTCACCGTTCATTTTTCTTCATGGGTGTGGATCTCCTCATTGTTCAACAGAGATAATTGAACTCATGTTCTACTTTCAAGTTTCATTACTATTCACTTTCCTGGGAATATGTCACAGCTATTTCTAGTGATTGTAAACACTGACTGTTACATATCATATTGTAAAATTTAATAACTTTTAGAAATTAGGTGTAAGCAATGGTCATTCCAATTGTCTCAATGTGGGAATCAAAGATGGGGAAGTTGGAAGCAGGAATAGAGATATCTTCAGATCTC

Fln Alignment:

Contig8549___RPRWKFHQWSFSLAGAILCLVIMFLISWTFTITSLVLASLIYYYVSIRGKAGDWGDGFKSAYFQLALRSLRSLGGNQVHPKNWYPIPLIFCKPWGILPPDVPCHPKLADFANCMRKKGRGMSIFASILEGNYRDKAEEARQASRLLTKYIDYKNCEGVSEVIIAKNISQGFRGIVQTMGLANLKPNIVCMRYPEIWREGSANNIPDSFVSIINDCAIANKAVVIVKGLDEWPSEYQKQYGTIDLYWIVRDAA*TRLSPKLLRARDSFESCKIQVFCIAEEDMEAEELKADVKKFLYDLRMQAEVIIVTMKSWEAHRQDSEAEMAVREDAMDAFSKSRKRIAAHAEYLRSSNDHK--NVQYNEQQVDKFLYTTLKxNNIILRYSRMAAVVLVSLXXXXXQHPSYFFMEYVDLLVDGIPRLLMVRGYTRDV
D5A9L5______________RPRWKFHHWSLSLIGAMLCIVIMFLISWTFTIVSLALASLLYYYVCLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYNEKAEEAKVACRQLGAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQFGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAEVIVITMKSWEAHREDQGLETG-REDAMEAFSRARKRIVLQAADMKRKMNAEGGSTSVNEHQVNKFLYTTLKxNATILRYSRMAAVVLVSLPPPPPNHPPYFYMEYMDLLVENIPRLLMVRGYRKDV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
488	66		33		0.997452
511		33		66	0.997452
874			80	20	0.995493
876		80	20		0.995493
877	80		20		0.995493
975	87		12		0.992554
1250	75		25		0.996473
1398	25		75		0.996473
1744	80		20		0.995493
1907	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain