SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8509

Length: 768 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8509

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dehydrodolichyl diphosphate synthase 2 [Arabidopsis thaliana] sp\|Q56Y11.2\|DDPS2_ARATH RecName: Full=Dehydrodolichyl diphosphate synthase 2; Short=Dedol-PP synthase 2 dbj\|BAA97345.1\| unnamed protein product [Arabidopsis thaliana] gb\|ACI31313.1\| At5g58770 [	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Di-trans,poly-cis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-	EC:2.5.1.31	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	74%
Blast2go	Biosynthesis of terpenoids and steroids	01062	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	Identity
Blast2go	dolichol biosynthetic process	GO:0019408	Biological Process	74%
Blast2go	metal ion binding	GO:0046872	Molecular Function	74%
Blast2go	dehydrodolichyl diphosphate synthase activity	GO:0045547	Molecular Function	74%
Blast2go	di-trans,poly-cis-decaprenylcistransferase activity	GO:0008834	Molecular Function	74%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Di-trans-poly-cis-decaprenylcistransferase-like	IPR001441	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Di-trans-poly-cis-decaprenylcistransferase-like, conserved site	IPR018520	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
283	11	88			0.923564
285			88	11	0.923564
286	88		11		0.923564
287	88			11	0.923564
298	90	10			0.90298
300			90	10	0.90298
301	90	10			0.90298
303	90			10	0.90298
304	90		10		0.90298
305	10			90	0.90298
306		10		90	0.90298
309		90		10	0.90298
310	90		10		0.90298
311	90		10		0.90298
315	90			10	0.90298
316	90	10			0.90298
317	10			90	0.90298
362	90	10			0.90298
365	90		10		0.90298
368	10	90			0.90298
370	90	10			0.90298
371	90			10	0.90298
372		90		10	0.90298
379		90		10	0.90298
380		10		90	0.90298
382	90	10			0.90298
383	90			10	0.90298
448		14	85		0.993533
450	83			16	0.994512
451	83			16	0.994512
463			16	83	0.994512
464			16	16	0.988813
465		16	83		0.994512
467	83			16	0.994512
469	16		83		0.994512
476		16	83		0.994512
520	16		83		0.994512
573		11		88	0.923564
675		50		50	1.0
725			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain