SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8507

Length: 1242 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8507 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SND3_RICCO	-	-	6.0e-14	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	zinc finger	-	-	3.4283e-16	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8P1

Fln msg: your sequence is longer than subject: 298 - 158

Fln protein: MAARCLMMLLADGSDRHSHSLTTTSSSESPAPSTLHPIRRRIKKPKRYDAGTADFPYSQEWDDGFKPEMMMRSYACKSCNKKFHSFQALGGHRASCQLKDSKSSFPKLLVHNQSDEDFKEAASASLPRPPVETYKQSLSNEIKKVRVHECPVCHRNFPSGQALGGHKRTHSSPPATSTNNSSSLSITEQQHLSAMRSTPELDLNMPAEDENDCTQVQPSSAVSVNLGGDFLNSTNSPPYGYKFMSYKSSQPWWMESHQPGVVKEDEADSRFMSNTGFARGRDLGCKQTGLPLITTVN*

Protein Length: 299

Fln nts: GAAAAGGATGAACAGGAG_-_ATGGCGGCGCGATGTCTGATGATGCTTCTGGCCGATGGCAGCGACCGCCACTCGCACTCGCTGACCACTACATCTTCCTCCGAGTCCCCTGCCCCTTCCACTCTCCACCCGATCAGACGGAGGATCAAGAAGCCAAAGAGGTATGATGCTGGGACTGCAGATTTTCCATACAGTCAGGAATGGGACGACGGATTCAAACCAGAGATGATGATGAGGTCATACGCATGCAAGTCCTGCAACAAGAAGTTTCATTCATTCCAAGCTCTTGGTGGCCACAGGGCAAGCTGCCAATTAAAGGATTCTAAGTCCAGCTTTCCCAAGCTGCTTGTTCACAACCAGAGCGATGAGGACTTTAAGGAAGCAGCTTCAGCTTCTCTCCCCAGGCCTCCTGTTGAGACTTATAAGCAGAGTTTGTCCAATGAGATTAAGAAAGTTCGGGTGCATGAATGCCCTGTTTGTCACAGGAATTTTCCATCTGGCCAAGCTTTGGGCGGTCACAAGAGGACCCACTCCAGTCCCCCTGCTACTAGTACAAACAATTCTTCAAGCCTTTCCATCACGGAGCAGCAGCACCTTTCAGCCATGAGAAGTACCCCCGAGTTGGATCTGAACATGCCTGCTGAAGATGAAAATGACTGCACCCAAGTGCAGCCCAGTTCTGCAGTTTCAGTCAATTTAGGTGGGGACTTCTTGAATTCTACCAATTCGCCTCCTTATGGCTACAAATTCATGTCTTATAAATCCTCTCAACCTTGGTGGATGGAGAGCCATCAGCCTGGTGTGGTTAAAGAGGATGAAGCAGACAGTCGATTCATGAGCAACACTGGATTTGCTAGGGGCCGAGATCTGGGCTGCAAACAAACCGGTTTGCCCTTGATTACTACTGTAAATTAG___ACTTATGCCTGAGCAAGGATTTACTTGGTTCTTTCCCATTCATTTAGTTCAATGGATGTAAACAGGTTCTAGATATACCAGTTGCATTCATTCTATAGATTCGTATGAGTTGAAATTTTTTAATTCATTCTTTATTAATGGCAAATCATCCATTTGTTTGTCATTTAATTGCTCTGTAAGAATTTGATAATTGCCCAGTTGATTTTTGAACACTGAATTTATGATATTAGCCTAAGCAGACTATTGCATATTTGAGGAATCTGATCCAATCAGGTTATTGCAGGGTACTACTAAATGGTATTTGCTGTTTGATTGTACTACAAAATTTCC

Fln Alignment:

Contig8507___KKVRVHECPVCHRNFPSGQALGGHKRTHXXXXXXXXXXXXXXSITEQQHLSAMRSTPEL--DLN-MPAEDENDCTQVQPSSAVSVN
D5A8P1______________EKVKGHECSICHKIFPSGQALGGHKRCHWTGDRVTETASSVIS-TEKQPKAPARNARDLPFDLNELPPVEEED-LEVVPACARSVD

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
279	85		14		0.999981
308		33	66		1.0
876		16		83	0.994512
1040	30		70		1.0
1121	33		66		1.0
1134	16		83		0.994512
1138		16	83		0.994512
1139		16	83		0.994512
1140	16		83		0.994512
1142		83	16		0.994512
1145		16	83		0.994512
1148		16	83		0.994512
1163		80	20		0.995493
1166		80		20	0.995493
1169		20	80		0.995493
1170	20			80	0.995493
1173		20	80		0.995493
1175	20		80		0.995493
1176			20	80	0.995493
1178			80	20	0.995493
1181		20	80		0.995493
1183	20			80	0.995493
1218		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain