SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8492

Length: 1210 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8492

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein n=3 Tax=Andropogoneae RepID=B6TN55_MAIZE	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	rna binding protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	developmental process	GO:0032502	Biological Process	80%
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	80%
Blast2go	RNA binding	GO:0003723	Molecular Function	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	80%
Blast2go	U12-type spliceosomal complex	GO:0005689	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-
Sma3		IPR015466	-	-
Sma3		IPR015903	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYV5

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas, atg_distance in limit (1-15): atg_distance = 14, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 192 - 248

Fln protein: MAYGSSDEDEDTRYYYRSPLPPPENQSQPPKRGSGGLVPSKSTLYVGNLDYTLTNSDIFTIFSTFGKVGKVTVMKDRHSRQSKGVAFVLFTTQEDAQRAVREMQGKILNKRKVKVSIAADNGRAAEFIKRRVYKDKTRCYECGEPGHLSYECPRNKLGPRERPVPKRGRKGQRNGGGGVWPRRGFERFWGF*

Protein Length: 193

Fln nts: ATGGGGATACTCTGTCCTGGCTGTGGCTCAATGATTTCTTCCCATCCTCAACAACAATGGCGTACGGCAGCAGCGATGAAGATGAAGATACACGGTACTATTACAGATCTCCGCTGCCTCCTCCTGAAAACCAATCCCAACCGCCGAAACGAGGCAGCGGCGGCCTGGTTCCTTCGAAATCCACCCTGTATGTTGGAAACCTGGACTACACCCTGACCAACAGCGACATCTTCACGATCTTCAGCACCTTCGGCAAGGTGGGCAAGGTCACCGTCATGAAGGACCGCCACTCTCGCCAGAGCAAGGGTGTCGCCTTCGTCCTCTTCACGACGCAGGAGGACGCTCAGAGGGCCGTCAGGGAAATGCAAGGTAAGATCCTCAACAAACGAAAGGTTAAGGTTTCCATTGCGGCGGACAATGGCAGGGCTGCGGAGTTCATCAAACGCAGGGTTTACAAAGACAAGACCCGCTGTTACGAATGTGGGGAGCCCGGGCATCTCTCCTATGAGTGCCCCAGGAATAAGCTCGGTCCGAGAGAGAGGCCGGTGCCCAAAAGGGGCCGAAAGGGTCAGAGGAATGGGGGCGGGGGTGTTTGGCCGAGGCGAGGCTTTGAGCGGTTTTGGGGTTTCTGA___CGATGAGGCCGAGGAACCGCAGTTTGAGGATGATAATTGGGCTTCGGTAGTCGATCCCCGGGGACTTCAGGAACGAACCAACGGAAGTGACCACGTGGGGAAGAGCAGCAGGCGGGCCGAGGGATCAGCGAAAAGGGCCAAGTATTTCAGCGATGAGAGCGGCGAGGAGGATTAAGATTAATCGTCTGGGCATTGGAGAGGAGACAGATTATGTCTGCGATGCCAGATTGGGTTACACTGGGCTTGGAGAAGTGGGGTTTACATGGGTTTGTGGAAGTATGCTGATGGGTTGGTTGCTAGTGTAATATTTCAACTTGGGTTGCAGGGTAACATGTTGAATTTAGATATCCTGTAAACATGCCCTCACTTCGGCTGGAAATGGTAGGTTAGTCTCAGTGTTTAGCAGTTTTATACGACAGGCTTGGCTTTGTTCAAGGACCAGGTTTGAATTGTAATTTGTTTGGAAGTGTATATAGGAAGAGTTGCCTACTATTGCTATACTGTACTTTATGTTGTTATTATCTATATTTTTATTCTAAACTTTCTTGCATAAAATAATATTTACAATTCATAATAGT

Fln Alignment:

Contig8492___LYVGNLDYTLTNSDIFTIFSTFGKVGKVTVMKDRHSRQSKGVAFVLFTTQEDAQRAVREMQGKILNKRKVKVSI
A9NYV5______________LYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEKMNGTEIGGRVIKVNI

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
763	33		66		0.997452
768	66			33	1.0
769	66	33			1.0
770	66		33		1.0
771			66	33	1.0
773	33		66		1.0
776	66			33	1.0
777	66			33	1.0
779			33	66	1.0
780	66	33			1.0
782			33	66	1.0
786			66	33	1.0
788	33		66		1.0
880			14	85	0.993533
882		14	85		0.993533
884	71			28	1.0
886	85	14			0.993533
887	85	14			0.993533
888		28	71		1.0
890			71	14	0.984337
891		14	85		0.993533
892	14		85		0.993533
893		14	85		0.993533
895			14	85	0.993533
900		14		85	0.993533
901			85	14	0.993533
902		14	85		0.993533
903	6	13	80		0.999961
904			13	86	0.999973
906		13		86	0.999973
912	86	13			0.999973
913		13	86		0.999973
915	86			13	0.999973
916			13	86	0.999973
922		13		86	0.999973
923			80	20	1.0
924		13	86		0.999973
925	13		86		0.999973
1154	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain