SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8486

Length: 867 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8486

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	double-strand break repair protein MRE11 [Arabidopsis thaliana] sp\|Q9XGM2.1\|MRE11_ARATH RecName: Full=Double-strand break repair protein MRE11 emb\|CAB50793.1\| Mre11 protein [Arabidopsis thaliana] dbj\|BAB10749.1\| DNA repair and meiosis protein Mre11 [Arabi	-	-	1.0e-11	39%
FL-Next	sp=Double-strand break repair protein MRE11; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	meiotic recombination 11	-	-	1.40712e-14	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	1.40712e-14	62%
Blast2go	response to DNA damage stimulus	GO:0006974	Biological Process	1.40712e-14	62%
Blast2go	nuclease activity	GO:0004518	Molecular Function	1.40712e-14	62%

Source	InterPros	Term	Type	Identity
Sma3	DNA repair exonuclease	IPR003701	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Mre11, DNA-binding	IPR007281	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
335	33		66		0.997452
339	66			33	0.997452
460	11		88		0.923564
480		88		11	0.923564
493	88	11			0.923564
495	88			11	0.923564
496		11		88	0.923564
497			11	88	0.923564
500		77		11	0.968132
502		11	88		0.923564
503		11	88		0.923564
506			11	88	0.923564
507		88	11		0.923564
508	88	11			0.923564
510			11	88	0.923564
511	88			11	0.923564
512		11		88	0.923564
533	88		11		0.923564
611	16		83		0.994512
647			83	16	0.994512
648		83		16	0.994512
702	75		25		0.996473
792	20	80			0.995493
804		75		25	0.996473
806	75		25		0.996473
807	75	25			0.996473
814			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
307	318	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain