SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8443

Length: 1237 nt

Origin of reads: Inia v1 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8443 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Synaptobrevin/VAMP-like protein n=2 Tax=Solanum RepID=F5C0F9_SOLCH	-	-	3.00004e-41	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	r- sec22-family	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Synaptobrevin	IPR001388	-	0.0	-
Sma3	Longin	IPR010908	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ24

Fln msg: your sequence is longer than subject: 288 - 218

Fln protein: MVKVTMIARVSDGLPLAEGLEHFRELNNGSDFEFYKQKAKLLFNKLSLGEPGPSRMSLRIEPYCFQYPAYTFSSYVATFN*LSN*GTNMMIRTVIFSPQLIKQLGVLEHLFTCFALIIERYSYILEDGVCYITLCDQSYPRKLAFHYLEDLQREFGKLDRSKIETASKPYAFIKFDVVIQRIRKLYLDTRTQRNLSKLNSEQYKVQQIITREFSEVIGNDENKKAEDASTNLMMSNRALPRLSNDIESAIRDSKVMEKVALKWMPAIALVTVICILIWARVVLWDAM*

Protein Length: 289

Fln nts: GAAGAACACATTCATTTGTTTGGACAGCAAAATAGATTTGTGGGAAGACCACATACATTTGTATTTTTTGGGACAAGTAGTGCAAGAGGCGAAATTATTGGTGTACTACTTACTAATTAATTTGTTTCTGGTGCATCAATC_-_ATGGTGAAGGTCACAATGATAGCGCGTGTCAGTGATGGGTTGCCTCTTGCGGAAGGTTTAGAGCATTTTCGCGAACTTAACAATGGTTCTGATTTTGAATTCTACAAGCAGAAGGCCAAGCTATTGTTCAACAAACTCTCTCTGGGTGAACCTGGACCTTCCAGAATGTCCCTGAGAATTGAGCCCTATTGCTTTCAGTATCCTGCATATACTTTTAGTTCATATGTAGCAACTTTTAATTAATTAAGCAATTAAGGTACAAACATGATGATTAGAACTGTAATTTTTTCCCCTCAATTAATTAAGCAGTTGGGGGTTTTAGAACATTTATTTACATGTTTTGCGTTGATTATTGAGCGGTATAGCTACATTCTTGAGGATGGTGTGTGCTATATTACTTTGTGTGACCAGTCATATCCCAGGAAGCTTGCTTTTCACTATTTGGAGGATCTGCAAAGAGAATTCGGGAAGCTTGATCGCTCCAAAATAGAAACTGCTTCCAAACCATACGCTTTCATCAAATTCGATGTTGTCATCCAGAGGATTAGAAAGCTTTATCTGGACACAAGAACCCAAAGAAACCTGTCAAAGCTAAACAGCGAGCAATATAAAGTCCAACAGATTATAACCAGGGAATTCAGTGAAGTTATTGGGAACGATGAAAACAAGAAAGCAGAGGATGCAAGCACAAACCTCATGATGTCTAACCGGGCATTACCAAGACTATCGAATGATATAGAATCGGCCATTAGGGATTCCAAAGTAATGGAGAAAGTGGCATTGAAGTGGATGCCGGCTATAGCTTTGGTAACCGTCATATGCATTCTTATATGGGCACGGGTGGTTCTTTGGGATGCCATGTAA___AGATTGAACTTGTTGAAGGTTGCCTCTGCCAATTGAGGCAGGGAGAATCTTAATGAAATATCATCATGCTCTGTCTGGTCAGGGTGAGGTCCACTAACTCAGATTCATAATTTTGATAGAATCAGGATCAGAAAACCAAGATGATTACTCATATCCATCTCCATGAAACTGACTCTGTTTTAGTTTTTCTTTATTTTCTAAAGCAACAGTGACAGCAATGCTTTTCCTTTTC

Fln Alignment:

Contig8443___MVKVTMIARVSDGLPLAEGLEHFRELNNGSDFEFYKQKAKLLFNKLSLGEPGPSRMSLRIEPYCFQYPAYTFSSYVATFN*LSN*GTNMMIRTVIFSPQLIKQLGVLEHLFTCFALIIERYSYILEDGVCYITLCDQSYPRKLAFHYLEDLQREFGKLDRSKIETASKPYAFIKFDVVIQRIRKLYLDTRTQRNLSKLNSEQYKVQQIITREFSEVIGNDENKKAEDASTNLMMSNRALPRLSNDIESAIRDSKVMEKVAL--KWMPAIALVTVICILIWARVVLW
A9NQ24______________MVKLTMIARVTDGLPLAEGLDDGREQK---DLEFYKQQAKSLFKKLSQGQHEPSRMSYETGPFVFHY------------------------------------------------IIEARVCYL--------TMCDRSYPKKLAFQYLEELKNEFEKLYQSQVETVARPYAFIKFDTFIQKTRKLYLDTRTQRNLAKLNDDLYEVQQIMTRNVQEVLGVGE--KLDQVS---QMSS----RLSSESRKYADKAKDLSRQAFIKKWAPVAIVLGVVFVLLWMRRYIW

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
352		85		14	0.993533
587	20		80		0.999996
589	90		10		0.90298
898		40		60	1.0
914	20		80		0.995493
926			80	20	0.995493
958	10		90		0.90298
967		10		90	0.90298
1047	16	83			0.994512
1108		83		16	0.994512
1109		83		16	0.994512
1121	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain