SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8440

Length: 930 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8440

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Germin-like protein 5 n=2 Tax=Glycine max RepID=C7S8B9_SOYBN	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	germin-like protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	nutrient reservoir activity	GO:0045735	Molecular Function	72%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	apoplast	GO:0048046	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Cupin 1	IPR006045	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
476	20		80		0.995493
479		20	80		0.995493
499	66	33			1.0
554		87		12	0.992554
563	12	12	75		0.975346
572		25		75	1.0
602	85		14		0.993533
620		14	7	78	0.999974
621			21	78	1.0
624		14		85	0.999981
629		14		85	0.999981
632		85		14	0.999981
647		16	83		0.999991
653	16		83		0.999991
654	16		83		0.999991
662		83		16	0.999991
672	27		72		1.0
752	20		20	60	0.99255
782	83		16		0.994512
784	83	16			0.994512
785	16		83		0.994512
806		83	16		0.994512
820	83		16		0.994512
864	33	66			0.997452
868	66			33	0.997452
869	66			33	0.997452
870	66			33	0.997452
873		33	66		0.997452
879	33			66	0.997452
880	33			66	0.997452
884	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain