SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8438

Length: 934 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8438 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj\|BAB09724.1\| importin beta [Arabidopsis thaliana] gb\|AED96362.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	importin subunit beta-1-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein import into nucleus, docking	GO:0000059	Biological Process	85%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	85%
Blast2go	binding	GO:0005488	Molecular Function	85%
Blast2go	nuclear pore	GO:0005643	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 616 aas, your sequence is shorter than subject: 247 - 874

Fln protein: MSLEVTQILLDAQSVDGAIRKHAEENLRQFQDHNLPAFLISLSGELANNEKRVESRKLAGLILKNTLDAKEPLRKAELVKRWISLDGAVKNQIKGFLLQTLSSPVPDARSTSAQVIAKIAGIELPQGQWPELIRTLLLNMGGPQMEPPAHLKQATLETLGYLCEEVAADSLAQDQVNSILTAVVQGMNSTEINNEVRLAATRALYNALNFAQTNFDNDIERDYIMRVVCEATLSPEVRIRQAALNA*

Protein Length: 248

Fln nts: CACGGATCGAGCTTTGCAGCGTATTCCTTCAAGGGGAGTTTCGGGTCTTCTGGTCGCAGAGCTTTGGCTGGCCGTGGATGTTATTTCGATTTCTTTTTTTGCCGAATCATAATTTAAAAGTCTGACATCTGTGTTCTTCAGTCTAACCAGGCAGATAAAAT_-_ATGTCCCTGGAGGTCACACAAATCCTTCTTGATGCACAGTCTGTTGATGGCGCTATTCGGAAGCATGCAGAAGAGAATCTGAGGCAGTTCCAAGATCATAATCTGCCGGCCTTTCTCATATCCCTATCTGGTGAACTAGCTAATAATGAAAAGCGTGTTGAGAGCCGTAAACTTGCGGGCTTGATTTTGAAGAACACTTTAGATGCCAAGGAGCCCCTCCGAAAGGCTGAGTTAGTAAAGAGATGGATCTCCCTGGATGGAGCCGTGAAGAATCAGATCAAGGGGTTCTTACTGCAAACTCTTTCTTCACCTGTTCCAGATGCTCGATCTACTTCAGCACAGGTTATAGCAAAGATTGCTGGTATTGAGTTACCTCAAGGCCAGTGGCCAGAGCTCATCAGGACATTATTACTCAACATGGGTGGCCCACAAATGGAACCACCTGCGCATCTCAAACAGGCCACTCTAGAAACTCTTGGATATCTTTGTGAGGAGGTTGCTGCAGATAGTCTTGCTCAGGATCAGGTGAATTCCATTCTTACAGCTGTTGTGCAGGGAATGAATTCAACCGAGATTAACAATGAGGTTAGGCTTGCTGCTACTCGAGCATTGTATAATGCTTTGAATTTTGCTCAGACGAATTTTGATAATGATATAGAGAGGGATTATATTATGAGAGTAGTGTGTGAAGCAACCCTGTCACCAGAAGTAAGGATTCGGCAAGCTGCTTTGAATGCCTAGTGTCGATATCTTCTACATATTATGAGAAGCTT

Fln Alignment:

Contig8438___MSLEVTQILLDAQSVDGAIRKHAEENLRQFQDHNLPAFLISLSGELANNEKRVESRKLAGLILKNTLDAKEPLRKAELVKRWISLDGAVKNQIKGFLLQTLSSPVPDARSTSAQVIAKIAGIELPQGQWPELIRTLLLNMGGPQMEPPAHLKQATLETLGYLCEEVAADSLAQDQVNSILTAVVQGMNSTEINNEVRLAATRALYNALNFAQTNFDNDIERDYIMRVVCEATLSPEVRIRQAA
C0PQV8______________MAMEVTQILLNAQSPDGNVRKIAEENLRQFQEQNLAGFLLSLSVELSNNDKPPESRRLAGLILKNSLDAKEAARKEEFLKRWVALDLSVKSQIKNGLLQTLSSTVPDARHTSSQVIAKIAAIEIPRQEWPELVGVLLANMGSPQLEKPVTLKQATLETLGYVCEEISSDVLAQDQVNSILTAVVQGMNAPDANSDVCLAATKALYNALDFAQTNFENEMERNYIMRVICETTLSADVRIRQAS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
418	85		14		0.993533
720		40		60	1.0
799			33	66	1.0
800	33		66		1.0
801	66			33	1.0
802	33		66		1.0
803	33			66	1.0
806		66		33	1.0
808		33	66		1.0
810	66	33			1.0
811	33		33	33	1.0
812	66	33			1.0
813			33	66	1.0
819	33		33		1.0
822			33	66	1.0
831	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain