SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8393

Length: 1149 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8393 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FH99.1\|FB302_ARATH RecName: Full=F-box protein At5g67140 dbj\|BAB10948.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL61920.1\| unknown protein [Arabidopsis thaliana] gb\|AAM47873.1\| unknown protein [Arabido	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	f-box protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN06

Fln msg:

Fln protein: MEDQVEVSAIEVLPVDALAHCFLSLSSFKDLAQVSIVCRKWREAVKQSLARRDKLSFAGWKMDDNSLARLVHGAFGLKELDISRGCWGCRITDDGLYKISLAKCCINLTSVSMWGITGITDNGVIQLVSRARSLQHLNIGGTFITDDSLFVIASHCPQLKVLILWGCRHVTERGLFAVIRGCPKLESINVWGMRVSLECYVSLLTIKPHLLIKPGGVHLHAGRVPQWPIVQ*

Protein Length: 233

Fln nts: CGTCGTGAATAGAGATGCGAAGACAGAGTGGTGATTTTGTTTGGGGAC_-_ATGGAGGACCAGGTGGAGGTCTCTGCAATTGAGGTTCTTCCCGTGGATGCTCTTGCTCACTGCTTCCTCTCATTATCATCATTCAAGGACTTGGCTCAGGTAAGCATTGTATGCAGGAAATGGAGGGAAGCCGTGAAACAGTCTCTGGCTCGGAGAGATAAGCTGAGCTTTGCAGGATGGAAAATGGATGACAATTCTCTGGCAAGACTCGTTCACGGGGCTTTCGGCCTCAAGGAACTTGACATTTCCCGGGGCTGCTGGGGTTGTCGAATAACAGATGATGGCCTGTACAAGATTTCTTTAGCCAAGTGTTGTATCAATCTTACTTCAGTCTCCATGTGGGGCATAACAGGGATAACAGACAATGGTGTTATCCAGCTAGTTTCTAGGGCCAGGTCTTTACAACATCTGAACATTGGCGGTACCTTCATTACTGATGATTCTTTGTTCGTAATTGCAAGTCATTGCCCTCAGTTGAAGGTGCTTATTCTTTGGGGTTGTCGTCATGTTACTGAGAGGGGCCTCTTCGCAGTTATTAGAGGATGTCCAAAACTGGAGTCAATCAACGTTTGGGGCATGAGAGTCTCGTTAGAGTGTTATGTGAGTTTGCTCACCATTAAACCGCATCTTCTTATTAAACCTGGAGGAGTACACTTACACGCAGGAAGGGTTCCACAGTGGCCAATTGTGCAATAA___TGATGAGCTGGGAATTCACAACTCAGCCTCTGCTCAAACCATCTGTGAATAATCTTATTTTGATTCGGTTCCTGTTTGTGAATAGAGTAGCTTGCAAGTCCTGCTATTTTTCTTTGTTTCACTACTCCTTTTCGAAGACCTTGTGTGGCCAGCTGTACAGTGTACAGTTAAAACTGAATTGGAAATTGTTATATCTTCTCATCTGTTTCAATTCTTTTGTGAACTACCGATATTGGAGTTATCTGTCATATTTGTTTATAAAGCAATTCTTGAGTGGGCACTGACATGCTAGTCCAACATAAATTACTACTGATTGTTGAACTTAAAAGCAAATATCATGGATGAAGTTCTGCTTCTATGCTGGTTTATAAGGAAATGGAATATAGTTGTTAACTGGATTAGGTT

Fln Alignment:

Contig8393___MEDQVEVSAIEVLPVDALAHCFLSLSSFKDLAQVSIVCRKWREAVKQSLARRDKLSFAGWKMDDNSLARLVHGAFGLKELDISRGCWGCRITDDGLYKISLAKCCINLTSVSMWGITGITDNGVIQLVSRARSLQHLNIGGTFITDDSLFVIASHCPQLKVLILWGCRHVTERGLFAVIRGCPKLESINVWGMRVSLECYVSLLTIKPHLLIKPGGVHLHAGRVPQWPIVQ
A9NN06______________MEDQVEVSAIEVLPVDALAHCFLSLSSFKDLAQVSIVCRKWREAVKQSLARRDKLSFAGWKMDDNSLARLVQGAFGLKELDISRGCWGCRITDDGLYKISLAKCCINLTSVSMWGITGITDNGVIQLVSRARSLQHLNIGGTFITDDSLFIIASHCPQLKVLILWGCRHVTERGLFALIRGCPKLESINVWGMRVSLECYVGLLTIKPHLLIKPGGVHLHAGRVPQWPIVQ

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
610	60		40		1.0
750	16	83			0.994512
877	11		88		0.923564
1102		10		90	0.90298
1129		60	40		1.0
1130	20			80	0.995493
1131		20	20	60	0.99255
1132		40		20	1.0
1133		80	20		0.995493
1134	20	40	40		1.0
1135	40	60			1.0
1136	60			40	1.0
1137			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain