SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8371

Length: 1953 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene8371
CTTCACATTTCTTCTTCGTGCTTTCGGTTTTGTCCATTTAAATAAATATTCCTCGCCATCTAATCTCATACGCGAGATAAGAATCCAAAACCCTTCTCATTCGAGGGTTTGGCAGCTCTGGAGCCACAGCCTCCATTGTCATCAACTCTGCCTTCTTCAGCTCATTATCATCTATCAACCCATCTTAGGTTATCGAATTTGGTGATCTATCCGTCTGGGCATTGAGTGACAAGGGTTTCGAAAAAGTAGAGTTAATTTTTTTCAGTACAGCAGGTACGTCAACCAGAGTGCAGTCTGCTTTAACTGTGGCAAAGAGGGGTTCAATGGAGGCCCCGGACCTCATCAATAACAGATATTCCATGAGCCGGGGTCCTGTAAAGCAACAACAACAGTTCGGCTCTGAAATACAGAGCAATAATAGTAATAACACTAACAACATCAATGTTAAGCACTTTGGAGCTGGAGGTCACAGTCACGCTATGCCACGGCCTGCGTACAGTCCATCTCCTATTTCAGGCCACAAAAGGGATAGCAGTGGTTTCGATGTTGGGCGCGGCAGTTCTCCAGCTTCTGTTGATGGTGGGAACTTCGTCAAACTTTTTGTGGGGCATGTACCCAGGACTGTTACAGAAGATGATATACGACAATTATTTGCAGAACACGGCCATGTACTTGAAGTTAATATGGTGAGAGAGAAAAGAATTGGCCAACAACATGGCTGCTATTTTATCAAATATGCAACTATTGAGGAAGCTGAGAGAGCCATTAAAGCTCTTCACAATAAACATACATTACCAGGGGGGATCAGTCCTTTACAAGTTAGATTTGCTGATGGAGAGCGGGAGCAGCTGGTGGAGCACAAATTATTTGTTGGTTGCTTAAATAAACAAGCATCAGAAGATGAAATTGAAGAGATTTTTGCTAGGTTTGGTCATGTTGATGACATATATATCATGAGAGATGAACAGAAGCAGAGCAGAGGGTGTGCATTTGTGAAGTACCCATCGAGAGATATGGCAGAAGCAGCCATTAGTGGATTGAATGGAATTCATGTGATGAGAGGTTGCAGTCAACCTTTGGCTGTGCGATTTGCTGAGCCCAAGAGAGCTAAATCTGGAGACATGAGAAATGTGCCTGCATTTGGAGGTCCAGGTTATGGAACAGAATTGCAGAGGCCATTTGGATCAAGGCCATCTTTTGGTGGTGGAGGGCACATGGGAGGACGTGGCATGCCTTCAAACTGGCGTCCTGCTGGTGTCGCAAGTGTGAGAAACCCATCTCCACAAGTTGGTTCCCATCCTTATGTTGCCCCTTCAACTCCTAGTGGTAGATCAGGATCTGTTGGAGGACACTCACCAATGGTGGGCCCAACGAGTGTTTCACAAATGTCAATGAATGGTCCGATTCAGGGATCTGTTCACACCTCTTCCACGATAGGTGGTCCTGCAAGGATGACTGCCCCTCCTCAGCTGCAGGGTTTTAATTCACCTCCTGCGCAGCGGCAGTCCCAACCTCAAGGTTGGATACCACCAGTGCAGCAGCCACGCCAGATGCAGCAACAGATGCAAACTCCATTTCAACATCAGCATTCACAACCACAACAATCTCATTCACAATTGCAGCCTGCTCAGCAATCCTTGCAATATGGTCAACAGATGCAGGCCTCACAACCACTTGCTCAGCAGCCCCAATTTGGTCAGCTACCAGTGTCACAGCAGTCATTATCTCAATATGGGCAATTGCCTGTCTCCCAATCCCAAGTGCAGCAACATGCTGCTCCAACTCTCCAGCAGGTTGTTCCACTGAGTATGCCAGCACAATCTATGCAGCCTCATCATCAACAGCAAGCACAGCCCCAGCAACAGCAACCTGCTCTTCAGTTAGTACACCAACAGCAACCTACTATGCAGCCAAATTTCCAGTCACAACAACATCCTTCATTTGCACAACAGC

Ace file of the UniGene sp_v2.0_unigene8371

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	flowering time control protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	64%
Blast2go	regulation of flower development	GO:0009909	Biological Process	64%
Blast2go	chromatin silencing by small RNA	GO:0031048	Biological Process	64%
Blast2go	embryo development	GO:0009790	Biological Process	64%
Blast2go	RNA binding	GO:0003723	Molecular Function	64%
Blast2go	abscisic acid binding	GO:0010427	Molecular Function	64%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	64%
Blast2go	intracellular organelle part	GO:0044446	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015903	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK5

Fln msg: STOP codon was not found. Distance to subject end: 367 aas, atg_distance in limit (1-15): atg_distance = 11, Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 543 - 290

Fln protein: MEAPDLINNRYSMSRGPVKQQQQFGSEIQSNNSNNTNNINVKHFGAGGHSHAMPRPAYSPSPISGHKRDSSGFDVGRGSSPASVDGGNFVKLFVGHVPRTVTEDDIRQLFAEHGHVLEVNMVREKRIGQQHGCYFIKYATIEEAERAIKALHNKHTLPGGISPLQVRFADGEREQLVEHKLFVGCLNKQASEDEIEEIFARFGHVDDIYIMRDEQKQSRGCAFVKYPSRDMAEAAISGLNGIHVMRGCSQPLAVRFAEPKRAKSGDMRNVPAFGGPGYGTELQRPFGSRPSFGGGGHMGGRGMPSNWRPAGVASVRNPSPQVGSHPYVAPSTPSGRSGSVGGHSPMVGPTSVSQMSMNGPIQGSVHTSSTIGGPARMTAPPQLQGFNSPPAQRQSQPQGWIPPVQQPRQMQQQMQTPFQHQHSQPQQSHSQLQPAQQSLQYGQQMQASQPLAQQPQFGQLPVSQQSLSQYGQLPVSQSQVQQHAAPTLQQVVPLSMPAQSMQPHHQQQAQPQQQQPALQLVHQQQPTMQPNFQSQQHPSFAQQ

Protein Length: 544

Fln nts: CTTCACATTTCTTCTTCGTGCTTTCGGTTTTGTCCATTTAAATAAATATTCCTCGCCATCTAATCTCATACGCGAGATAAGAATCCAAAACCCTTCTCATTCGAGGGTTTGGCAGCTCTGGAGCCACAGCCTCCATTGTCATCAACTCTGCCTTCTTCAGCTCATTATCATCTATCAACCCATCTTAGGTTATCGAATTTGGTGATCTATCCGTCTGGGCATTGAGTGACAAGGGTTTCGAAAAAGTAGAGTTAATTTTTTTCAGTACAGCAGGTACGTCAACCAGAGTGCAGTCTGCTTTAACTGTGGCAAAGAGGGGTTCA_-_ATGGAGGCCCCGGACCTCATCAATAACAGATATTCCATGAGCCGGGGTCCTGTAAAGCAACAACAACAGTTCGGCTCTGAAATACAGAGCAATAATAGTAATAACACTAACAACATCAATGTTAAGCACTTTGGAGCTGGAGGTCACAGTCACGCTATGCCACGGCCTGCGTACAGTCCATCTCCTATTTCAGGCCACAAAAGGGATAGCAGTGGTTTCGATGTTGGGCGCGGCAGTTCTCCAGCTTCTGTTGATGGTGGGAACTTCGTCAAACTTTTTGTGGGGCATGTACCCAGGACTGTTACAGAAGATGATATACGACAATTATTTGCAGAACACGGCCATGTACTTGAAGTTAATATGGTGAGAGAGAAAAGAATTGGCCAACAACATGGCTGCTATTTTATCAAATATGCAACTATTGAGGAAGCTGAGAGAGCCATTAAAGCTCTTCACAATAAACATACATTACCAGGGGGGATCAGTCCTTTACAAGTTAGATTTGCTGATGGAGAGCGGGAGCAGCTGGTGGAGCACAAATTATTTGTTGGTTGCTTAAATAAACAAGCATCAGAAGATGAAATTGAAGAGATTTTTGCTAGGTTTGGTCATGTTGATGACATATATATCATGAGAGATGAACAGAAGCAGAGCAGAGGGTGTGCATTTGTGAAGTACCCATCGAGAGATATGGCAGAAGCAGCCATTAGTGGATTGAATGGAATTCATGTGATGAGAGGTTGCAGTCAACCTTTGGCTGTGCGATTTGCTGAGCCCAAGAGAGCTAAATCTGGAGACATGAGAAATGTGCCTGCATTTGGAGGTCCAGGTTATGGAACAGAATTGCAGAGGCCATTTGGATCAAGGCCATCTTTTGGTGGTGGAGGGCACATGGGAGGACGTGGCATGCCTTCAAACTGGCGTCCTGCTGGTGTCGCAAGTGTGAGAAACCCATCTCCACAAGTTGGTTCCCATCCTTATGTTGCCCCTTCAACTCCTAGTGGTAGATCAGGATCTGTTGGAGGACACTCACCAATGGTGGGCCCAACGAGTGTTTCACAAATGTCAATGAATGGTCCGATTCAGGGATCTGTTCACACCTCTTCCACGATAGGTGGTCCTGCAAGGATGACTGCCCCTCCTCAGCTGCAGGGTTTTAATTCACCTCCTGCGCAGCGGCAGTCCCAACCTCAAGGTTGGATACCACCAGTGCAGCAGCCACGCCAGATGCAGCAACAGATGCAAACTCCATTTCAACATCAGCATTCACAACCACAACAATCTCATTCACAATTGCAGCCTGCTCAGCAATCCTTGCAATATGGTCAACAGATGCAGGCCTCACAACCACTTGCTCAGCAGCCCCAATTTGGTCAGCTACCAGTGTCACAGCAGTCATTATCTCAATATGGGCAATTGCCTGTCTCCCAATCCCAAGTGCAGCAACATGCTGCTCCAACTCTCCAGCAGGTTGTTCCACTGAGTATGCCAGCACAATCTATGCAGCCTCATCATCAACAGCAAGCACAGCCCCAGCAACAGCAACCTGCTCTTCAGTTAGTACACCAACAGCAACCTACTATGCAGCCAAATTTCCAGTCACAACAACATCCTTCATTTGCACAACAGC

Fln Alignment:

Contig8371___GGNFVKLFVGHVPRTVTEDDIRQLFAEHGHVLEVNMVREKRIGQQHGCYFIKYATIEEAERAIKALHNKHTLPGGISPLQVRFADGER
A9NWK5______________GSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGT-DMDG--RPLRVNIAEDRR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
104	66			33	0.997452
105		25		75	0.996473
108		75	25		0.996473
110	75		25		0.996473
141	66			33	1.0
144	33		66		1.0
147	66			33	1.0
240	16		83		0.994512
684			88	11	0.923564
685			11	88	0.923564
686			11	88	0.923564
687	88		11		0.923564
688	88	11			0.923564
986	83		16		0.994512
991	16		83		0.994512
1083		20		80	0.995493
1317	22	77			0.999999
1318	11	88			0.923564
1320			11	88	0.923564
1321		88		11	0.923564
1484			90	10	0.90298
1485		10		90	0.90298
1486	10			90	0.90298
1487		10		90	0.90298
1489	90	10			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain