SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8339

Length: 1364 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8339

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] emb\|CAB96849.1\| putative protein [Arabidopsis thaliana] gb\|AED91612.1\| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	wd and tetratricopeptide repeats protein 1	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8L3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 42 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is longer than subject: 343 - 201

Fln protein: MAIRDCNEAHKINPMSGWAHVTMAESLSQLGKHKEALDYAMQANFLDPTNHQLAEKVQYLREKLAAAEDGKNSKKNDGESKLERRPQRVRSLSELLFRTEADQSDSSQDSRRAEREDSDYDDDMDVEMEFEMSVSGDDDREAEAGLRPGSLNLRVRRRGAASRDSSQRNSSSGSPPSGMQNEEISPQMEIAIDLRQRYVGHCNVGTDIKQASFLGTKGDFVASGSDDGRWFIWQKRTGRLMKVLKGDDNVVNCVQCHPFDCAVATSGIDNTIKMWTPCAQEPSIVFGGVAGPETADIFNLMAENQRKMRSQREISLPFELLQRFRMHDVGEGTVHPFECTQS*

Protein Length: 344

Fln nts: ATGGGGTGCAACAGCTTTTTTAAAGAGATCATGGAAAAATGATGCTCAT_-_ATGGCTATACGAGATTGCAATGAGGCTCATAAAATAAACCCTATGTCTGGGTGGGCCCATGTTACGATGGCAGAATCCCTTTCGCAGCTAGGAAAACACAAAGAGGCTTTAGACTATGCCATGCAAGCCAATTTTTTGGATCCAACAAACCATCAGCTAGCTGAAAAAGTGCAATATCTTCGGGAAAAACTTGCTGCAGCTGAAGATGGGAAAAATAGTAAGAAGAATGATGGGGAGTCTAAATTGGAAAGGCGGCCTCAAAGGGTGCGGTCATTGAGTGAGTTACTTTTCAGAACAGAGGCAGATCAGAGTGACTCATCACAGGATAGCCGAAGAGCTGAAAGAGAAGATTCAGATTATGATGATGATATGGATGTAGAAATGGAGTTTGAAATGTCCGTCTCTGGTGATGATGATAGAGAGGCAGAGGCAGGACTTCGACCTGGAAGTTTGAATTTGAGGGTTCGTAGAAGAGGTGCTGCAAGCAGAGACAGTAGCCAGAGAAACAGTTCTTCAGGATCTCCACCTTCTGGAATGCAAAATGAGGAGATTTCCCCTCAGATGGAGATAGCCATAGATTTGCGACAGCGATATGTAGGGCATTGCAATGTGGGGACAGACATTAAACAAGCCAGCTTTCTAGGCACAAAAGGGGATTTTGTTGCTAGTGGGAGTGATGATGGGCGGTGGTTTATTTGGCAAAAGAGAACAGGGAGGTTGATGAAGGTGCTAAAAGGAGATGACAATGTTGTTAACTGTGTGCAGTGCCACCCTTTTGACTGCGCTGTAGCAACAAGTGGTATAGACAATACAATCAAAATGTGGACTCCTTGTGCACAAGAGCCATCCATAGTTTTCGGTGGTGTAGCAGGCCCAGAGACTGCAGATATATTCAATTTGATGGCTGAAAATCAGCGTAAAATGCGCAGTCAACGCGAAATTAGCTTGCCATTCGAACTTCTGCAACGCTTTAGAATGCATGACGTTGGTGAAGGGACCGTACATCCCTTTGAATGCACACAAAGCTAACCTTTTTTTCAAGGCTCAAAGGATATTGTAATTTTTCTATCAGAAATGAATCGTTTATCTTGAGAACGAAGTAATTTCTAAAATTTATTGATTGCCTTTCCAGGCAAATGCAAATATCCTGTAACGTATTACCATCGTCACATTGTAGTCGATCTGTGTGCTTCATGTGGTTGTAATGGATTGAAGATCCAGGGACAAAATAAAGAAAAATCTATTGCGTACTGCCCTTGAGACGCGCTGATTGCATTCATGGCATAGCCTAACCAGAAAGATAGCAAATGAAATT

Fln Alignment:

Contig8339___SPQMEIAIDLRQRYVGHCNVGTDIKQASFLGTKGDFVASGSDDGRWFIWQKRTGRLMKVLKGDDNVVNCVQCHPFDCAVATSGIDNTIKMWTPCAQEPSIVFGGVAGPETADIFNLMAENQRKMRSQREIS
D5A8L3______________SSEMSEDLEAPQVYEGHRNAQT-VKGVNFFGANTEYVVSGSDCGRIFIWKKKGGQLVHLMKGDKEVVNCLEPHPYATILATSGIEKNIKVWSPTASH--------LIPLPDNVEELMEANKRKREQHARIS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
378	75		25		0.996473
539	16		83		0.994512
697		66	33		0.997452
725	33			66	0.997452
726		33	66		0.997452
729			66	33	0.997452
846	33			66	1.0
848			33	66	1.0
924		80	20		0.995493
925		80		20	0.995493
926	80	20			0.995493
928	80			20	0.995493
932		20		80	0.995493
933			80	20	0.995493
934		80		20	0.995493
935	80		20		0.995493
937	80	20			0.995493
939	80		20		0.995493
942		20		80	0.995493
982	85		14		0.993533
983	85			14	0.993533
986		85		14	0.993533
989	85	14			0.993533
990	85	14			0.993533
993	85		14		0.993533
999		85		14	0.993533
1002		14		85	0.993533
1005	14		85		0.993533
1161	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain