SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8249

Length: 410 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene8249
CGTCGTGACCTTGGCTGTCACTCAAATTTTAATGCTTATGTTCCAATGCTCTAGCCGAATGCCGCATTGTCCTTGCGGATGGAGAAACCCAATTGGTCAGAGTGCAAGTATGGAGCAGAGTGCCACCGAAAGAATAAAGATCATTTTCTCCAATATAGCCATCCATCTAAACAGGAGGAAGAATCCCCAGGGAATGTTAAGCCGACCATGGTTATTGAACGCGGTTCGAATTCAGGCAGTGCGAACGGTAAGAGTGTTATTGTGATTCTAGTAGGGCTTCCTGCCAGTGGGAAGAGCACGTTTTGTCAGAAAGTCCTTGAGGGTGCGCGCAGGCCTTGGACCAGAATATGCCAGGATATAATCTCAAATGGAAAACGGGCAGTAAGGCCCAGTGCTTGAAATGCACATCA

Ace file of the UniGene sp_v2.0_unigene8249

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aprataxin [Arabidopsis thaliana] sp\|Q9M041.1\|BH140_ARATH RecName: Full=Transcription factor bHLH140; AltName: Full=Basic helix-loop-helix protein 140; Short=AtbHLH140; Short=bHLH 140; AltName: Full=Transcription factor EN 122; AltName: Full=bHLH transcrip	-	-	9.0e-10	52%
FL-Next	sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	transcription factor bhlh140-like	-	-	1.58562e-12	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	1.58562e-12	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		1.58562e-12	69%
Blast2go	Metabolic pathways	01100		1.58562e-12	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	1.58562e-12	69%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	1.58562e-12	69%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.58562e-12	69%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	1.58562e-12	69%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	1.58562e-12	69%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	1.58562e-12	69%

Source	InterPros	Term	Type	Identity
Sma3	Histidine triad (HIT) protein	IPR001310	-	-
Sma3	Appr-1-p processing	IPR002589	-	-
Sma3	Histidine triad motif	IPR011151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M041

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 633 aas, your sequence is shorter than subject: 133 - 912

Fln protein: RRDLGCHSNFNAYVPML*PNAALSLRMEKPNWSECKYGAECHRKNKDHFLQYSHPSKQEEESPGNVKPTMVIERGSNSGSANGKSVIVILVGLPASGKSTFCQKVLEGARRPWTRICQDIISNGKRAVRPSA*

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTAATGCTTATGTTCCAATGCTCTAGCCGAATGCCGCATTGTCCTTGCGGATGGAGAAACCCAATTGGTCAGAGTGCAAGTATGGAGCAGAGTGCCACCGAAAGAATAAAGATCATTTTCTCCAATATAGCCATCCATCTAAACAGGAGGAAGAATCCCCAGGGAATGTTAAGCCGACCATGGTTATTGAACGCGGTTCGAATTCAGGCAGTGCGAACGGTAAGAGTGTTATTGTGATTCTAGTAGGGCTTCCTGCCAGTGGGAAGAGCACGTTTTGTCAGAAAGTCCTTGAGGGTGCGCGCAGGCCTTGGACCAGAATATGCCAGGATATAATCTCAAATGGAAAACGGGCAGTAAGGCCCAGTGCTTGAAATGCACATCA

Fln Alignment:

Contig8249___KSVIVILVGLPASGKSTFCQKVLEGARRPWTRICQDIISNGKRAVR
Q9M041______________KQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
261		14		85	0.993533
268	16	83			0.994512
269		16		83	0.994512
271			83	16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain