SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8232

Length: 1040 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene8232 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RAB6-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9SD87_RICCO	-	-	7.0e-34	74%
FL-Next	tr=RAB6-interacting protein, putative; Ricinus communis (Castor bean).	-	-	0.0	74%
Blast2go	kinase interacting protein 1 -like	-	-	1.40469e-33	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	1.40469e-33	85%
Blast2go	kinase activity	GO:0016301	Molecular Function	1.40469e-33	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	0.0	-
Sma3	KIP1-like	IPR011684	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
330	14	85			0.993533
332		85		14	0.993533
333	12	75	12		0.975346
334	12	75		12	0.975346
406		87		12	0.992554
417	87	12			0.992554
418	87	12			0.992554
421	87			12	0.992554
430	14		85		0.993533
431	85	14			0.993533
434	85			14	0.993533
442		16		83	0.994512
457		16		83	0.994512
458	83	16			0.994512
526			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain