SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8230

Length: 1165 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8230

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptide transporter, putative n=1 Tax=Ricinus communis RepID=B9SIR4_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	metal-nicotianamine transporter ysl5	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	75%
Blast2go	transmembrane transport	GO:0055085	Biological Process	75%
Blast2go	oligopeptide transporter activity	GO:0015198	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Ets	IPR000418	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA59

Fln msg: Separated hits, possible frame ERROR between 1057 and 1063, Distance to subject end: 403 aas, your sequence is shorter than subject: 385 - 625

Fln protein: MPVALLVDIDCRFGIEQGVSQERRLLSHGKDSINMRRDLGCHSVFDFIGSLCSRFSGASLCSRFSGAKMDQLSSESRSLEVEDGHGRDNGGLVKRVHHANNGEESGSGEAWQDQDGTTSQIEEKGLSIEQIFDTKKVPPWWEQITFRGIFVSMLLGIMFCIIVMKLNLTTGIIPSLNVSAGLLGFFFIKTWTKFLEKFGLLKTPFTRQENTVIQTCVVACYGIAFSGGFGSYILGMSRKIYEQAGTDIAGNTADNIKDPSLSWIIGFLFVVSFLGLLAVVPLRKIMVIDYKLTYPSGTATAVLINGFHTPQGDKLARKQVRALGKFFTLSFLWGFFQWFFTATDTCGFxxxPTFGLQAFNQEFYFDFSATYIGAGMLCPHLVNLS

Protein Length: 386

Fln nts: ATTTCTCTCC_-_ATGCCGGTGGCCCTTCTGGTCGACATAGATTGCCGTTTTGGAATTGAACAAGGGGTTAGTCAAGAAAGAAGGCTCCTTTCACACGGGAAAGATAGCATAAATATGCGTCGTGACCTTGGCTGTCACTCAGTGTTCGATTTCATAGGTTCTTTGTGTTCTCGGTTCAGTGGTGCTTCTTTGTGTTCTCGGTTCAGTGGTGCCAAAATGGATCAACTGAGCTCTGAAAGCAGATCCCTGGAAGTAGAGGACGGCCATGGCCGAGACAATGGAGGACTTGTGAAACGAGTTCATCATGCAAATAATGGAGAAGAATCAGGCTCTGGCGAAGCTTGGCAAGACCAGGATGGAACGACGAGTCAGATTGAAGAGAAAGGGCTGAGCATAGAGCAGATCTTTGACACCAAGAAGGTGCCTCCCTGGTGGGAGCAGATCACATTCAGAGGAATTTTTGTGAGCATGCTCTTGGGTATTATGTTTTGTATAATTGTCATGAAATTGAACCTCACCACTGGAATCATCCCTTCTCTCAATGTTTCTGCCGGATTGCTGGGTTTCTTTTTCATCAAAACATGGACCAAATTCCTCGAGAAGTTCGGGTTATTGAAGACTCCGTTCACCAGACAAGAGAATACTGTCATTCAAACCTGTGTGGTGGCTTGTTATGGGATTGCATTCAGCGGGGGCTTTGGGTCATATATTTTGGGTATGAGCAGAAAGATCTATGAACAGGCAGGCACAGATATTGCTGGGAATACCGCAGACAATATCAAAGATCCAAGCCTTAGTTGGATTATTGGTTTTCTTTTCGTCGTGAGTTTTCTGGGACTGTTAGCTGTTGTTCCCCTTCGGAAGATAATGGTGATAGACTACAAGCTCACCTATCCAAGTGGTACAGCAACAGCGGTTCTCATAAATGGATTCCACACTCCTCAGGGAGACAAACTAGCCAGGAAACAAGTTAGAGCGCTTGGAAAATTCTTTACGCTGAGTTTTCTCTGGGGCTTTTTCCAGTGGTTTTTCACAGCTACTGATACTTGTGGCTTTCAxxxxxxTCCTACTTTTGGATTGCAAGCTTTCAATCAGGAATTTTACTTCGACTTCAGCGCGACATATATAGGAGCTGGGATGCTCTGTCCTCACTTGGTAAACTTGTCCA

Fln Alignment:

Contig8230___MKLNLTTGIIPSLNVSAGLLGFFFIKTWTKFLEKFGLLKTPFTRQENTVIQTCVVACYGIAFSGGFGSYILGMSRKIYEQAGTDIAGNTADNIKDPSLSWIIGXXXXXXXXXXXXXXPLRKIMVIDYKLTYPSGTATAVLINGFHTPQGDKLARKQVRALGKFFTLSFLWGFFQWFFTATDTCGFQxxPTFGLQAFNQEFYFDFSATYIGAGMLCPHLVNLS
D5AA59______________MNLNLTTGLAPAMNVSAGLLGFVFMKSWSKLLMKFGLLKVPFTRQENTVIQTCIVACYSLAYGGGFGSYVLGLNRKTYERAGVNTPGNTPDTVKEPTIAWMIGFLFLVTFVGIIALVPLRKVLIIDYKLTYPSGTATAVLINGFHTPHTDKVARKQVRCFGKYFTFSFFWGFFQWFFTGGDDCGFExxPFFGLNARKQRFYFDFNMIYVGAGMICPHLVNIS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
953	83		16		0.994512
955	16			83	0.994512
959	16	83			0.994512
971		16		83	0.994512
977			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain