SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8207

Length: 523 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene8207
ATGTGGAACTGTGGCAGAAAATATTGGTTATGGGAAAATCCCTGACAAAATTGACATGAAGAAAGTTGAACAGGCAGCAAAATTGGCAAATGCTGATGGATTCATTCAAAAACTTTCAGAAGGTTATGACACAAATGTTGGTCAGCGTGGCTCATGCTTGAGTGGAGGCCAGCGCCAAAGGTTGGCTATTGCAAGGGCCATATACCAGGAGGCATCCATATTGATCTTGGATGAGGCAACTTCTGCACTGGATAATAGATCAGAATTGCTAGTAAGAGAGGCTGTGGAGCACCTTATGACTAATCGAACTGTATTTGTAATTGCTCACCGTCTGGAAACTGTGCGCAAGGCTGACCGAATCATTCTCTTGGATGGTGGAAAATTGGTGGAAGAAGGAACTCATTCTTCTCTTTTGGCCCAAGGTGGTCAATATGCATCATTATATTCAAGGAAGGAACTTTTAACAGGTGTTTAAAATTTGTTCAAACCATGTGTTGTCAGCGATTTGGTGCTCCAGACACCA

Ace file of the UniGene sp_v2.0_unigene8207

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RBJ7_SELML	-	-	75%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	50%
Blast2go	atp-binding cassette transporter	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	80%
Blast2go	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Diguanylate cyclase, predicted	IPR000160	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ABC transporter, lipid A export, MsbA	IPR011917	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 158 - 1316

Fln protein: CGTVAENIGYGKIPDKIDMKKVEQAAKLANADGFIQKLSEGYDTNVGQRGSCLSGGQRQRLAIARAIYQEASILILDEATSALDNRSELLVREAVEHLMTNRTVFVIAHRLETVRKADRIILLDGGKLVEEGTHSSLLAQGGQYASLYSRKELLTGV*

Protein Length: 159

Fln nts: ATGTGGAACTGTGGCAGAAAATATTGGTTATGGGAAAATCCCTGACAAAATTGACATGAAGAAAGTTGAACAGGCAGCAAAATTGGCAAATGCTGATGGATTCATTCAAAAACTTTCAGAAGGTTATGACACAAATGTTGGTCAGCGTGGCTCATGCTTGAGTGGAGGCCAGCGCCAAAGGTTGGCTATTGCAAGGGCCATATACCAGGAGGCATCCATATTGATCTTGGATGAGGCAACTTCTGCACTGGATAATAGATCAGAATTGCTAGTAAGAGAGGCTGTGGAGCACCTTATGACTAATCGAACTGTATTTGTAATTGCTCACCGTCTGGAAACTGTGCGCAAGGCTGACCGAATCATTCTCTTGGATGGTGGAAAATTGGTGGAAGAAGGAACTCATTCTTCTCTTTTGGCCCAAGGTGGTCAATATGCATCATTATATTCAAGGAAGGAACTTTTAACAGGTGTTTAA___AATTTGTTCAAACCATGTGTTGTCAGCGATTTGGTGCTCCAGACACCA

Fln Alignment:

Contig8207___TVAENIGYGKIPDKIDMKKVEQAAKLANADGFIQKLSEGYDTNVGQRGSCLSGGQRQRLAIARAIYQEASILILDEATSALDNRSELLVREAVEHLMTNRTVFVIAHRLETVRKADRIILLDGGKLVEEGTHSSLLAQ-GGQYASLYSRKE
E6Y0T0______________TIKENLLYGK--DGATLEEIKAAAELANAAKFINKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
157		66	33		0.997452
158			33	66	0.997452
260	83		16		0.994512
304	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain