SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8196

Length: 921 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene8196

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich receptor-like protein kinase [Arabidopsis thaliana] gb\|AAL11557.1\|AF424563_1 AT5g01890/T20L15_160 [Arabidopsis thaliana] emb\|CAB82759.1\| putative protein [Arabidopsis thaliana] gb\|AAO42766.1\| At5g01890/T20L15_160 [Arabidopsis thaliana] gb\|ACN	-	-	4.0e-09	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	protein	-	-	1.37603e-10	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.37603e-10	59%
Blast2go	kinase activity	GO:0016301	Molecular Function	1.37603e-10	59%
Blast2go	protein binding	GO:0005515	Molecular Function	1.37603e-10	59%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.37603e-10	59%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
328			33	66	1.0
331		66	33		1.0
332	66			33	1.0
333		66	33		1.0
334	33	66			1.0
335		33		66	1.0
337		66		33	1.0
339		66	33		1.0
340			33	66	1.0
342	66			33	1.0
349	66			33	1.0
351	25	75			1.0
359	37	62			1.0
408		12		87	0.992554
428		87		12	0.992554
485			87	12	0.992554
515	85			14	0.993533
537	20		80		0.995493
561	25		75		0.996473
689	75		25		0.996473
823		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain