SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene8011

Length: 2145 nt

Origin of reads: Inia v1

UniGene Fasta

>sp_v2.0_unigene8011
GAAAGAAAGGTTACTACCACGAAGCACTGAGAATGTATTATGAAATGCAACGCGCAGGCGTAGAGCCAGACAGGTTAGTATTTATTTCTTTAATCAATGCATGCGGTCGCCTATCAGATCTGCAAGCGGGTATGCAGATTCATCAGGATATCATTGCAAGGGGAATTGAATCAGATGTTTTTGTTGGTACTGCTCTCGCATCGATGTATTTCAAGTGTGAAAGTTTAGAGAATGCACGTCAAATGTTTGACAGAATGCCTGCACGAAATGTTGTGTCATGGAATGCAATGATTGCTGGCTATTCCCAAAATGGTATGCCCCATAAAGCCTGGGAAGTCTTCAAGGAAATGTTATTTCAGGGCGTAAAACCCAACTCAGTCACTATGGTTAATATTCTTCCTCTGTGTGCCAATTTATTGGCTCTGGAACAAGGTAAGCAAATCCACGGATATGTAATAAGAAATGTTTTTGAATCTGATATTTCTGTGTGCAATGGGTTTGTAGACATGTATGCAAAATGTGGAAATGTTAACATTGCCTACGAATTGTTTAGAAGAATGCCTAAACGAGATGTTGTGTCATGGACTGCAATCATTGCTGGTTATTCCCGGAATGATCATTCTTGCGAAGCTTTGGCATTATTCAATGAAATGCAAGTCCAGAACATACAACCCAACTCAATCACCATTGCCAGTATTCTTCCAGTGTGTGCAGATTTACTGGCTCTGCAACAAGGTAAACAGATCCACGGCTATGTCATAAGAAGTGGATTTGAATCTGATGTTTTTGTGGGCACCGGGCTTGTAGACATGTATGCCAAATGTAAGCATGTTAATACTGCTCACAAATTGTTTGAAAGAATACCCCAACGAAATGCTGTGTTATGGAATGCAATTATCGCTGGTTGTTCCCAGAATGGCCATCCCCATGAAACCTTGGCATTCTTCAGTGAAATGCAAATCCAAGGCATAAAACCGGACCCAGTCACCGTGGTTAGTGTTCTGCCTGCCTGTGCCGATTTATTGGCTCTGGAACAGGGTAAGCAGATTCATGGTTATGTACTCAGAAGTGGATTTGAGTCTGATGTTTTTGTGGGCACTGGCCTTGTAGATATGTATGCCAAGTGTGGGCATATAGGCATTGCTCGACAAGTGTTTGACAAGATGTTGAATAGGAATGTGGTCTCATGGAATTCAATGATTTTGGGATATGGAATTCATGGTCATGGTGAGGACGCTCTTGGTCTCTTTTCCCAAATGCAACAGACAGGCACAAAACCGAATCATAGCACCTTCATTGGTGTTTTAACAGCCTGCTCTCATGCAGGGCTAGTAGAAGAGGGCCGTCAACATTTTGAGTACATGAAGTCAGATTATGGCCTTGCACCTGAGCTGGGGCATTATGCTTGCTTGGTTGATCTTCTTGGGCGTGCAGGGCATCTAGATGAAGCACATGACATTATCAAAACAATGCCATTAGAACCCAACGTTGTCGTGTGGGGGGCATTGCTTGGAGCCTGCAGGATTCACTGCAAGATTGAGCTTGGAGTACAAGCAGCAAAACACCTTTTTGAATTACAGCCAAACAATGTTGGATATTATGTACTGTTGTCAAACATCTATGCTGAGGCAGGCAGGTGGGAGGATGTAGCAAAGTTGAGGAGAGTGATGAAAGAGAGAGAAACAAAGAAGCTACCAGGATCTAGTTTTATTGAGGTAAATAAAAAGCTTCATACGTTCCTTGTGGGCGACAGAACCCATTCTCAATCTGAAAAAATCTATGCAATGCTGGAAACCTTATATGGACAAATGAAGGAGGCAGGATATGTCCCTAACACAAATCCTGTACTACAAGATGTGGAGGAGGAGATGAAGGAAACTGTTCTATTCAGTCATAGTGAGAAGCTAGCCATCGCTTTTGGGGTCATCAATACACGCCCAGGAAACCCCATCCGGATAGTGAAGAATCTTCGCATGTGTACTGACTGCCACAATGCCATTAAGTTCATCTCCAAGATTGTTGGTCGAGTCATTATTGTGAGAGATGCAAACCGTTTCCACCACTTTAACCATGGATTGTGTTCTTGTGGAGATTACTGGTGATGCTAATTGAATGGAACAAGAAATACATATTTGTTTTTATAGT

Ace file of the UniGene sp_v2.0_unigene8011

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	pentatricopeptide repeat-containing protein at1g11290-like	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	mRNA modification	GO:0016556	Biological Process	66%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	66%
Blast2go	binding	GO:0005488	Molecular Function	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: your sequence is shorter than subject: 700 - 795

Fln protein: KKGYYHEALRMYYEMQRAGVEPDRLVFISLINACGRLSDLQAGMQIHQDIIARGIESDVFVGTALASMYFKCESLENARQMFDRMPARNVVSWNAMIAGYSQNGMPHKAWEVFKEMLFQGVKPNSVTMVNILPLCANLLALEQGKQIHGYVIRNVFESDISVCNGFVDMYAKCGNVNIAYELFRRMPKRDVVSWTAIIAGYSRNDHSCEALALFNEMQVQNIQPNSITIASILPVCADLLALQQGKQIHGYVIRSGFESDVFVGTGLVDMYAKCKHVNTAHKLFERIPQRNAVLWNAIIAGCSQNGHPHETLAFFSEMQIQGIKPDPVTVVSVLPACADLLALEQGKQIHGYVLRSGFESDVFVGTGLVDMYAKCGHIGIARQVFDKMLNRNVVSWNSMILGYGIHGHGEDALGLFSQMQQTGTKPNHSTFIGVLTACSHAGLVEEGRQHFEYMKSDYGLAPELGHYACLVDLLGRAGHLDEAHDIIKTMPLEPNVVVWGALLGACRIHCKIELGVQAAKHLFELQPNNVGYYVLLSNIYAEAGRWEDVAKLRRVMKERETKKLPGSSFIEVNKKLHTFLVGDRTHSQSEKIYAMLETLYGQMKEAGYVPNTNPVLQDVEEEMKETVLFSHSEKLAIAFGVINTRPGNPIRIVKNLRMCTDCHNAIKFISKIVGRVIIVRDANRFHHFNHGLCSCGDYW*

Protein Length: 701

Fln nts: GAAAGAAAGGTTACTACCACGAAGCACTGAGAATGTATTATGAAATGCAACGCGCAGGCGTAGAGCCAGACAGGTTAGTATTTATTTCTTTAATCAATGCATGCGGTCGCCTATCAGATCTGCAAGCGGGTATGCAGATTCATCAGGATATCATTGCAAGGGGAATTGAATCAGATGTTTTTGTTGGTACTGCTCTCGCATCGATGTATTTCAAGTGTGAAAGTTTAGAGAATGCACGTCAAATGTTTGACAGAATGCCTGCACGAAATGTTGTGTCATGGAATGCAATGATTGCTGGCTATTCCCAAAATGGTATGCCCCATAAAGCCTGGGAAGTCTTCAAGGAAATGTTATTTCAGGGCGTAAAACCCAACTCAGTCACTATGGTTAATATTCTTCCTCTGTGTGCCAATTTATTGGCTCTGGAACAAGGTAAGCAAATCCACGGATATGTAATAAGAAATGTTTTTGAATCTGATATTTCTGTGTGCAATGGGTTTGTAGACATGTATGCAAAATGTGGAAATGTTAACATTGCCTACGAATTGTTTAGAAGAATGCCTAAACGAGATGTTGTGTCATGGACTGCAATCATTGCTGGTTATTCCCGGAATGATCATTCTTGCGAAGCTTTGGCATTATTCAATGAAATGCAAGTCCAGAACATACAACCCAACTCAATCACCATTGCCAGTATTCTTCCAGTGTGTGCAGATTTACTGGCTCTGCAACAAGGTAAACAGATCCACGGCTATGTCATAAGAAGTGGATTTGAATCTGATGTTTTTGTGGGCACCGGGCTTGTAGACATGTATGCCAAATGTAAGCATGTTAATACTGCTCACAAATTGTTTGAAAGAATACCCCAACGAAATGCTGTGTTATGGAATGCAATTATCGCTGGTTGTTCCCAGAATGGCCATCCCCATGAAACCTTGGCATTCTTCAGTGAAATGCAAATCCAAGGCATAAAACCGGACCCAGTCACCGTGGTTAGTGTTCTGCCTGCCTGTGCCGATTTATTGGCTCTGGAACAGGGTAAGCAGATTCATGGTTATGTACTCAGAAGTGGATTTGAGTCTGATGTTTTTGTGGGCACTGGCCTTGTAGATATGTATGCCAAGTGTGGGCATATAGGCATTGCTCGACAAGTGTTTGACAAGATGTTGAATAGGAATGTGGTCTCATGGAATTCAATGATTTTGGGATATGGAATTCATGGTCATGGTGAGGACGCTCTTGGTCTCTTTTCCCAAATGCAACAGACAGGCACAAAACCGAATCATAGCACCTTCATTGGTGTTTTAACAGCCTGCTCTCATGCAGGGCTAGTAGAAGAGGGCCGTCAACATTTTGAGTACATGAAGTCAGATTATGGCCTTGCACCTGAGCTGGGGCATTATGCTTGCTTGGTTGATCTTCTTGGGCGTGCAGGGCATCTAGATGAAGCACATGACATTATCAAAACAATGCCATTAGAACCCAACGTTGTCGTGTGGGGGGCATTGCTTGGAGCCTGCAGGATTCACTGCAAGATTGAGCTTGGAGTACAAGCAGCAAAACACCTTTTTGAATTACAGCCAAACAATGTTGGATATTATGTACTGTTGTCAAACATCTATGCTGAGGCAGGCAGGTGGGAGGATGTAGCAAAGTTGAGGAGAGTGATGAAAGAGAGAGAAACAAAGAAGCTACCAGGATCTAGTTTTATTGAGGTAAATAAAAAGCTTCATACGTTCCTTGTGGGCGACAGAACCCATTCTCAATCTGAAAAAATCTATGCAATGCTGGAAACCTTATATGGACAAATGAAGGAGGCAGGATATGTCCCTAACACAAATCCTGTACTACAAGATGTGGAGGAGGAGATGAAGGAAACTGTTCTATTCAGTCATAGTGAGAAGCTAGCCATCGCTTTTGGGGTCATCAATACACGCCCAGGAAACCCCATCCGGATAGTGAAGAATCTTCGCATGTGTACTGACTGCCACAATGCCATTAAGTTCATCTCCAAGATTGTTGGTCGAGTCATTATTGTGAGAGATGCAAACCGTTTCCACCACTTTAACCATGGATTGTGTTCTTGTGGAGATTACTGGTGA___TGCTAATTGAATGGAACAAGAAATACATATTTGTTTTTATAGT

Fln Alignment:

Contig8011___KKGYYHEALRMYYEMQRAGVEPDRLVFISLINACGRLSDLQAGMQIHQDIIARGIESDVFVGTALASMYFKCESLENARQMFDRMPARNVVSWNAMIAGYSQNGMPHKAWEVFKEMLFQGVKPNSVTMVNILPLCANLLALEQGKQIHGYVIRNVFESDISVCNGFVDMYAKCGNVNIAYELFRRMPKRDVVSWTAIIAGYSRNDHSCEALALFNEMQVQNIQPNSITIASILPVCADLLALQQGKQIHGYVIRSGFESDVFVGTGLVDMYAKCKHVNTAHKLFERIPQRNAVLWNAIIAGCSQNGHPHETLAFFSEMQIQGIKPDPVTVVSVLPACADLLALEQGKQIHGYVLRSGFESDVFVGTGLVDMYAKCGHIGIARQVFDKMLNRNVVSWNSMILGYGIHGHGEDALGLFSQMQQTGTKPNHSTFIGVLTACSHAGLVEEGRQHFEYMKSDYGLAPELGHYACLVDLLGRAGHLDEAHDIIKTMPLEPNVVVWGALLGACRIHCKIELGVQAAKHLFELQPNNVGYYVLLSNIYAEAGRWEDVAKLRRVMKERETKKLPGSSFIEVNKKLHTFLVGDRTHSQSEKIYAMLETLYGQMKEAGYVPNTNPVLQDVEEEMKETVLFSHSEKLAIAFGVINTRPGNPIRIVKNLRMCTDCHNAIKFISKIVGRVIIVRDANRFHHFNHGLCSCGDYW
B8LQA8______________KNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
966		66		33	0.997452
1169		14		85	0.993533
1183	14		85		0.993533
1368	20		80		0.995493
1775	75		8		0.99999
1845			15	84	0.999986
1846		84		15	0.999986
1849	23		7		1.0
1851		15		84	0.999986
1852	84		15		0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain