SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7984

Length: 421 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene7984
AATGTAGTTGTCAAAAGGCGAAGTCTTCCTTGGGAGGATGTCGAGATGGATGCCATCCATTCGTTGCAGCTGATTCTGAGGGATTCCTTTCAAGATATTGATGACAGTGACAACAAAACCATGATACATTCACGGCTAAATGACTTGAGGCTTCAAGGAATAGATGAGCTAAGCGCAGTGACAAATGAGATGGTACGGTTAATTGAAACTGCAACTGTGCCAATTTTGGCAATCGATTCTAATGGACTCGTAAATGGATGGAATACTAAAGCAGCTGAACTCACAGGATTGTTGGCCGATGAAGTTATAGGGAGGCCTTTAATTGATCTTGTTCAGCATGACTCGGTTGAAACCGTGAAAAAAATGCTCTACTTGGCTTTGCAAGGGGAAGAAGAACAAAATGTTGAAATCAAACTACATT

Ace file of the UniGene sp_v2.0_unigene7984

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB	-	-	97%
FL-Next	sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Blast2go	phytochrome o	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	90%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	90%
Blast2go	protein-tetrapyrrole linkage	GO:0017006	Biological Process	90%
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	90%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	90%
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	90%
Blast2go	detection of visible light	GO:0009584	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	G-protein coupled photoreceptor activity	GO:0008020	Molecular Function	90%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	90%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome A/B/C/D/E	IPR012129	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40762

Fln msg: Distance to subject end: 427 aas, your sequence is shorter than subject: 140 - 1136

Fln protein: NVVVKRRSLPWEDVEMDAIHSLQLILRDSFQDIDDSDNKTMIHSRLNDLRLQGIDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQHDSVETVKKMLYLALQGEEEQNVEIKLH

Protein Length: 141

Fln nts: AATGTAGTTGTCAAAAGGCGAAGTCTTCCTTGGGAGGATGTCGAGATGGATGCCATCCATTCGTTGCAGCTGATTCTGAGGGATTCCTTTCAAGATATTGATGACAGTGACAACAAAACCATGATACATTCACGGCTAAATGACTTGAGGCTTCAAGGAATAGATGAGCTAAGCGCAGTGACAAATGAGATGGTACGGTTAATTGAAACTGCAACTGTGCCAATTTTGGCAATCGATTCTAATGGACTCGTAAATGGATGGAATACTAAAGCAGCTGAACTCACAGGATTGTTGGCCGATGAAGTTATAGGGAGGCCTTTAATTGATCTTGTTCAGCATGACTCGGTTGAAACCGTGAAAAAAATGCTCTACTTGGCTTTGCAAGGGGAAGAAGAACAAAATGTTGAAATCAAACTACATT

Fln Alignment:

Contig7984___VVKRRSLPWEDVEMDAIHSLQLILRDSFQDIDDSDNKTMIHSRLNDLRLQGIDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQHDSVETVKKMLYLALQGEEEQNVEIKL
Q40762______________VVKRRSLPWEDVEMDAIHSLQLILRDSFHDIDDSDSKTMIHARLNDLRLQGIDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQHDSVEIVKKMLYLALQGEEEQNVEIKL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
227			11	88	0.923564
229			88	11	0.923564
250	11		88		0.923564
359	80	20			0.995493
361	80			20	0.995493
362	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain