SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7937

Length: 1161 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7937

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease family protein [Arabidopsis thaliana] dbj\|BAB01977.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76257.1\| Amino acid permease family protein [Arabidopsis thaliana]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	neutral amino acid transport protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transmembrane transport	GO:0003333	Biological Process	85%
Blast2go	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Amino acid permease domain	IPR004841	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPK8

Fln msg: Distance to subject end: 334 aas, your sequence is shorter than subject: 168 - 502

Fln protein: MEEYSDETQAQPNENSSKHNKPGNGGLPKLSMLPLVALIFYEVSGGPFGIEDSVRAGGPLLALLGFIIFPFIWSVPEALITAELATAFPENGGYVLWISAAFGPFWGFQEGLWKWCSGVIDNALYPVLFLDYLKHSFPVFARGWTRISTLLGITFSLTYLNYRGLTIV

Protein Length: 169

Fln nts: ACGGAGGTAGATGGCTCAGAGTCGCCACGCTGCACTGAGGGCGGAGCCAAAGGTCCTCCTTACATGATCACTGTGTGCATGAATTTTACTTGAAGGAATTCTGATAATCTTCTTGGTTTGGATTGGAATTCAGGCAGGCATGTGCGTAGCTTTTTTTTTGGTCGCCAGAGGGAGGGGATGCCTTCCTGAGAGAGTCCGGAAATTGGCCATGCCATACCGTGGGATTCCAAATTCTATGGTCTCCTGGCTCAACATTTCATATTCATCGGGTGTTATTTGATAAGGGGAACCGGGCCTCGGATCTGCAACCACGGAAAAAGCAGGCCATGAATTGGTAAGTTTTTCATGGTGTATTCGTGTGAAATTTCTCGTCCACTATCAGAATTGAAGCAGTCGTTATACTATGGTTTATTTGTGTTAGTGACGGAATTTTCAGTTAGAGGTAAGATAAAATTATCTTCAATCAGAGACGATTAGTGGATAAGAAATGTTGATTTTTTCTGCCATTAAATAGCTGCGGGCTGAATTGATAACGTTAGAATTCGAGTGGGAGAAAGATAAAATGCAAATTGAGCATGACTGGTTGTGAACAGATCAGAAACAAACCATTTTGATATCTCGGCCAGTCTAAGTAATTGAGGGAGTGGGATTGGATA_-_ATGGAAGAGTACTCGGATGAGACTCAGGCCCAACCCAATGAGAACTCTTCCAAGCACAATAAACCGGGCAATGGTGGGTTGCCTAAACTTTCCATGCTTCCTCTGGTCGCTCTTATATTCTATGAGGTCTCTGGAGGTCCTTTTGGTATAGAGGATTCTGTAAGAGCAGGAGGTCCACTCTTGGCTTTATTGGGGTTTATCATATTTCCCTTTATTTGGAGTGTCCCTGAAGCCCTCATCACAGCAGAACTTGCCACTGCTTTTCCTGAGAATGGGGGGTATGTGCTCTGGATATCTGCTGCATTTGGTCCCTTTTGGGGTTTTCAAGAGGGTCTCTGGAAGTGGTGCAGTGGAGTCATAGATAATGCTCTCTACCCTGTCCTCTTTCTGGATTACTTGAAGCATTCATTCCCAGTTTTTGCTAGAGGCTGGACACGAATATCAACCCTTCTTGGAATCACTTTTTCTTTGACGTATCTAAACTACAGAGGATTAACCATTGTGG

Fln Alignment:

Contig7937___MEEYSDETQAQPNENSSKHNKPGNGGLPKLSMLPLVALIFYEVSGGPFGIEDSVRAGGPLLALLGFIIFPFIWSVPEALITAELATAFPENGGYVLWISAAFGPFWGFQEGLWKWCSGVIDNALYPVLFLDYLKHSFPVFARGWTRISTLLGITFSLTYLNYRGLTIV
B8LPK8______________MEEYSDETHAQTSEDSSKHNKPGNGGLPKLSMLPLVALIFYEVSGGPFGIEDSVRAGGPLLALLGFIIFPFIWSVPEALITAELATAFPENGGYVLWISAAFGPFWGFQEGVWKWFSGVMDNALYPVLFLDYLKHSFPVFAKGWTRISTLLGITFSLTYLNYRGLTIV

SNPs (tot: 5)

Position	A %	G %	T %	Probability
668		80	20	0.995493
669	80	20		0.995493
670		80	20	0.995493
715	20	80		0.995493
859	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain