SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene7846

Length: 1696 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene7846

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WS01041.B21.1_K07 SS-R-N-A-11 Picea sitchensis cDNA clone WS01041_K07 3, mRNA sequence.	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	plastid division protein chloroplastic-like	-	-	1.67487e-40	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	1.67487e-40	63%
Blast2go	protein self-association	GO:0043621	Molecular Function	1.67487e-40	63%
Blast2go	plastid inner membrane	GO:0009528	Cellular Component	1.67487e-40	63%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.67487e-40	63%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Z6

Fln msg: your sequence is shorter than subject: 268 - 586

Fln protein: NVGVPRKKFSGSLLGKSKIVGKLFLAAVLAGSVIATYKLHMQSRPIKRLYESHTAMSDRTIRTSIGAVHQQSSCSTSNAHSLSGSIGRRITMAIAKSLIPFTQQNQNPTEQNAWPVNDLSLLLGKSRNNAFRRKQMDFREAESLVRRWQSIKAEALGPNHEIHRLSEILAEPMLSQWQALAESANSSSCFWRFVLLHSSIVHAEISSDDIGWEIAEVEAVLEEAAELVDESQLKNPNYYSTYHIRYVLKRGSDRRWKFCGAGIQSPV*

Protein Length: 269

Fln nts: AAAATGTTGGGGTCCCACGAAAGAAATTTTCTGGAAGTTTGTTGGGGAAGAGTAAAATAGTTGGAAAATTATTTTTGGCTGCTGTCCTTGCAGGCTCTGTAATTGCAACCTACAAGTTGCATATGCAATCGAGACCAATTAAACGTTTATATGAAAGTCATACTGCAATGTCAGATCGCACAATACGAACATCCATAGGTGCTGTACATCAGCAGTCAAGCTGTTCAACTAGTAATGCTCACAGCCTTAGTGGAAGCATTGGAAGGAGGATAACCATGGCAATTGCAAAGTCTTTGATACCGTTTACACAGCAGAACCAAAATCCTACCGAGCAAAATGCTTGGCCAGTTAATGATCTTTCTCTATTGCTTGGAAAGTCACGAAATAATGCATTTCGTAGAAAACAAATGGATTTCAGGGAAGCAGAGAGTCTTGTCAGGCGGTGGCAAAGTATCAAAGCCGAAGCCTTGGGACCAAACCATGAGATCCATCGCCTTTCGGAGATTCTTGCAGAGCCCATGCTCTCTCAGTGGCAAGCTCTGGCAGAATCAGCAAACTCGAGTTCATGCTTTTGGAGATTTGTGCTCCTGCATTCATCTATAGTGCATGCTGAAATTTCGTCCGATGACATTGGTTGGGAAATTGCAGAAGTGGAAGCAGTACTGGAAGAAGCAGCTGAACTTGTGGATGAGTCTCAGCTCAAAAACCCAAATTACTATAGCACGTATCACATAAGGTATGTTTTGAAGAGGGGCAGTGACAGAAGATGGAAATTTTGTGGAGCTGGCATTCAATCGCCCGTCTAG___AGGTTCAAACAAGAGGTGTTGATTTGGTTTCTTGATGATTTTTACGTGGTGTCTGTATGCATAGATATTTCATAAAACTCTTCTTACTTGTGGACATCCTAAACCCATTAAGTTTGGATGAGAACGGAAAAACATGAAGAGACAAGGGACAAGTCCTTTCCAGATTAATTATATTTGGTCTCTTGAGAGAATGGAAGGGAACAGGGTAAGGGGAGGAATAGTTAATCCAGATTGTCCATTCTTTGGTGTCATTCGCAGGTTTTTTTCAAATCAACCTGCAGAGTGTTGTATACTATATGGGTCATCTTAGAACATGGGGGGTGTTGATTGTCTCTTCTGACTCAATTGCTGCAACTGGAGAGTCTCAATTGATTTCCTGTATTTGCCATTGAGTTGAGGATCATATTGTGTGTTAATATTAGAGTCTGGCTTGTGGGATGTCACAATCTATATATCTAGTGACACCACACGAATGGGCCAGATGGGCTTGCGGTACTCTGAATCAATTTGTATTGACCAAGGATTAGCCAGGCTTTATATGCTTTGACTACAACCTTCAAAGTTGTTGATTATGTTCTTATACTATTACCTACTCATGGATTATAAGAATTGAACGGCTTTTCAGGCTTTTTGGTTGACAGCTAACTTTGCTTGTATTGTTACGGACCAAAATGGAGGATCTCTATTCAGATTGAGTTTTCGACTTTGCCAAAATATTTTTGGATTGTTCACAATCTTGAAGATAACATACCTTTGGACACAATAAGGCAATTTAACAAAAGTTTATTTTGGAACACATTTGGCAAATATGTACCTTCTCAACATTATCATGTGTGGCAACATTGTTGCAGATTATTGTACAAATGATCACTTGAGACATGTCTATTCCC

Fln Alignment:

Contig7846___QMDFREAESLVRRWQSIKAEALGPNHEIHRLSEILAEPMLSQWQALAESANSSSCFWRFVLLHSSIVHAEISSDDIGWEIXXXXXXXXXXXXXXDESQLKNPNYYSTYHIRY
D5A7Z6______________KMDARLAENLVRKWQMLKSQALGPNHAVSRLSEILDGQMLKIWSERAKDIAEHGWFWEYSLLGLTIESVTVSTD--GMRAMVEATLQEAARLIDTSHPEHNDSYRSTYTTRY

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
587		80		20	0.995493
589		20		80	0.995493
607	80		20		0.995493
609		20	80		0.995493
610		80	20		0.995493
614	80	20			0.995493
615	80	20			0.995493
618			20	80	0.995493
619		80	20		0.995493
620		20	80		0.995493
622		80	20		0.995493
623		80		20	0.995493
624		20	80		0.995493
627		20	80		0.995493
628	80			20	0.995493
911		66	33		0.997452
912		66		33	0.997452
913	66	33			0.997452
914			33	66	0.997452
916	66		33		0.997452
918		33	66		0.997452
919		33		66	0.997452
924	66	33			0.997452
928			66	33	0.997452
929	66	33			0.997452
934	66			33	0.997452
935	66	33			0.997452
989		33		66	0.997452
1015	33		66		0.997452
1216	10		90		0.90298
1220			10	90	0.90298
1221	90		10		0.90298
1377		10		90	0.90298
1498	20			80	0.995493
1572	66		33		0.997452
1574	33		33		0.997753
1579	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain